Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_166100.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_166100.1 0 -0.74 -0.09 1.45 4.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166100.1 SmLINC00007-IBu 0.88 1.43e-05 3.00e-04
Smp_166100.1 SmLINC01520-IBu 0.93 3.95e-07 2.66e-05
Smp_166100.1 SmLINC02029-IBu 0.92 8.70e-07 4.65e-05
Smp_166100.1 SmLINC02539-IBu 0.88 9.74e-06 2.00e-04
Smp_166100.1 SmLINC02540-IBu 0.85 5.07e-05 8.00e-04
Smp_166100.1 SmLINC02577-IBu 0.90 2.70e-06 1.00e-04
Smp_166100.1 SmLINC02776-IBu 0.86 3.57e-05 6.00e-04
Smp_166100.1 SmLINC02783-IBu 0.90 4.35e-06 1.00e-04
Smp_166100.1 SmLINC02786-IBu 0.96 9.77e-09 2.10e-06
Smp_166100.1 SmLINC03658-IBu 0.90 3.18e-06 1.00e-04
Smp_166100.1 SmLINC04235-IBu 0.86 3.01e-05 5.00e-04
Smp_166100.1 SmLINC04237-IBu 0.86 2.57e-05 5.00e-04
Smp_166100.1 SmLINC04627-IBu 0.81 2.00e-04 2.40e-03
Smp_166100.1 SmLINC04896-IBu 0.91 1.33e-06 6.31e-05
Smp_166100.1 SmLINC05404-IBu 0.93 4.16e-07 2.76e-05
Smp_166100.1 SmLINC05604-IBu 0.84 6.76e-05 1.00e-03
Smp_166100.1 SmLINC05684-IBu 0.92 5.65e-07 3.43e-05
Smp_166100.1 SmLINC06239-IBu 0.80 3.00e-04 3.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_166100.1 0 -0.74 -0.09 1.45 4.23
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 Smp_166100.1 0.93 3.57e-07 2.60e-05
Smp_041540.1 Smp_166100.1 0.96 4.03e-09 1.25e-06
Smp_166100.1 Smp_070540.1 0.96 2.52e-09 9.25e-07
Smp_105450.1 Smp_166100.1 0.94 1.02e-07 1.09e-05
Smp_166100.1 Smp_105450.2 0.93 4.18e-07 2.90e-05
Smp_126340.1 Smp_166100.1 0.95 4.06e-08 5.87e-06
Smp_136730.1 Smp_166100.1 0.93 4.22e-07 2.92e-05
Smp_139160.1 Smp_166100.1 0.91 2.40e-06 9.89e-05
Smp_139240.1 Smp_166100.1 0.90 4.15e-06 1.00e-04
Smp_152150.1 Smp_166100.1 0.91 1.67e-06 7.68e-05
Smp_164400.1 Smp_166100.1 0.92 5.27e-07 3.41e-05
Smp_167830.1 Smp_166100.1 0.90 4.62e-06 1.00e-04
Smp_170840.1 Smp_166100.1 0.90 2.88e-06 1.00e-04
Smp_181070.1 Smp_166100.1 0.91 1.92e-06 8.45e-05
Smp_187140.1 Smp_166100.1 0.90 4.52e-06 1.00e-04
Smp_166100.1 Smp_194910.1 0.90 3.41e-06 1.00e-04