Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_165940.1 Data

Correlation between Smp_165940.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_165940.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_165940.1 0 2.18 3.00 4.87 6.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165940.1 SmLINC00001-IBu 0.90 3.34e-06 1.00e-04
Smp_165940.1 SmLINC00004-IBu 0.92 8.93e-07 4.73e-05
Smp_165940.1 SmLINC00007-IBu 0.92 1.07e-06 5.38e-05
Smp_165940.1 SmLINC00266-IBu 0.90 4.18e-06 1.00e-04
Smp_165940.1 SmLINC00525-IBu 0.85 5.35e-05 8.00e-04
Smp_165940.1 SmLINC01084-IBu 0.85 5.78e-05 9.00e-04
Smp_165940.1 SmLINC01431-IBu 0.84 6.91e-05 1.00e-03
Smp_165940.1 SmLINC01520-IBu 0.94 1.74e-07 1.51e-05
Smp_165940.1 SmLINC02029-IBu 0.89 6.62e-06 1.00e-04
Smp_165940.1 SmLINC02084-IBu 0.87 2.18e-05 4.00e-04
Smp_165940.1 SmLINC02376-IBu 0.80 2.00e-04 3.00e-03
Smp_165940.1 SmLINC02394-IBu 0.86 3.06e-05 5.00e-04
Smp_165940.1 SmLINC02539-IBu 0.95 3.25e-08 4.75e-06
Smp_165940.1 SmLINC02540-IBu 0.93 3.86e-07 2.62e-05
Smp_165940.1 SmLINC02545-IBu 0.88 1.15e-05 2.00e-04
Smp_165940.1 SmLINC02546-IBu 0.83 8.95e-05 1.30e-03
Smp_165940.1 SmLINC02577-IBu 0.94 1.21e-07 1.17e-05
Smp_165940.1 SmLINC02776-IBu 0.86 3.50e-05 6.00e-04
Smp_165940.1 SmLINC02783-IBu 0.89 5.04e-06 1.00e-04
Smp_165940.1 SmLINC02786-IBu 0.86 3.54e-05 6.00e-04
Smp_165940.1 SmLINC03108-IBu 0.80 3.00e-04 3.30e-03
Smp_165940.1 SmLINC03326-IBu 0.89 8.28e-06 2.00e-04
Smp_165940.1 SmLINC03658-IBu 0.80 3.00e-04 3.20e-03
Smp_165940.1 SmLINC03927-IBu 0.89 8.62e-06 2.00e-04
Smp_165940.1 SmLINC04235-IBu 0.85 4.25e-05 7.00e-04
Smp_165940.1 SmLINC04237-IBu 0.83 9.45e-05 1.30e-03
Smp_165940.1 SmLINC04421-IBu 0.88 1.50e-05 3.00e-04
Smp_165940.1 SmLINC04896-IBu 0.81 1.00e-04 2.30e-03
Smp_165940.1 SmLINC05289-IBu 0.87 2.22e-05 4.00e-04
Smp_165940.1 SmLINC05404-IBu 0.88 1.41e-05 3.00e-04
Smp_165940.1 SmLINC05604-IBu 0.90 2.53e-06 9.95e-05
Smp_165940.1 SmLINC05684-IBu 0.90 3.41e-06 1.00e-04
Smp_165940.1 SmLINC06024-IBu 0.81 2.00e-04 2.40e-03

Correlation between Smp_165940.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_165940.1 0 2.18 3.00 4.87 6.44
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165940.1 Smp_007950.1 0.93 2.19e-07 1.85e-05
Smp_165940.1 Smp_037720.1 0.94 1.17e-07 1.20e-05
Smp_083430.1 Smp_165940.1 0.94 8.29e-08 9.52e-06
Smp_165940.1 Smp_095410.1 0.92 9.31e-07 5.07e-05
Smp_165940.1 Smp_102780.1 0.91 2.36e-06 9.79e-05
Smp_165940.1 Smp_123880.1 0.92 7.82e-07 4.49e-05
Smp_165940.1 Smp_131410.1 0.92 7.09e-07 4.19e-05
Smp_165940.1 Smp_136730.1 0.90 4.57e-06 1.00e-04
Smp_165940.1 Smp_137810.1 0.94 1.34e-07 1.32e-05
Smp_165940.1 Smp_139240.1 0.91 1.72e-06 7.83e-05
Smp_165940.1 Smp_140720.1 0.94 1.66e-07 1.53e-05
Smp_165940.1 Smp_155570.1 0.92 9.28e-07 5.06e-05
Smp_165940.1 Smp_163700.1 0.92 5.97e-07 3.72e-05
Smp_165940.1 Smp_164320.1 0.91 2.45e-06 1.00e-04
Smp_165940.1 Smp_187140.1 0.91 1.53e-06 7.23e-05
Smp_165940.1 Smp_192780.1 0.93 3.98e-07 2.80e-05
Smp_165940.1 Smp_194380.1 0.92 7.04e-07 4.17e-05
Smp_165940.1 Smp_194910.1 0.90 4.87e-06 1.00e-04
Smp_165940.1 Smp_196830.1 0.95 1.54e-08 3.05e-06
Smp_165940.1 Smp_202610.1 0.92 1.18e-06 6.02e-05
Smp_165940.1 Smp_203030.1 0.90 3.41e-06 1.00e-04
Smp_165940.1 Smp_205580.1 0.90 4.03e-06 1.00e-04