Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_165510.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165510.1 SmLINC00037-IBu 0.87 1.62e-05 3.00e-04
Smp_165510.1 SmLINC00133-IBu 0.88 1.05e-05 2.00e-04
Smp_165510.1 SmLINC00282-IBu 0.89 6.03e-06 1.00e-04
Smp_165510.1 SmLINC00784-IBu 0.96 6.19e-09 1.55e-06
Smp_165510.1 SmLINC01462-IBu 0.81 1.00e-04 2.20e-03
Smp_165510.1 SmLINC01486-IBu 0.86 2.89e-05 5.00e-04
Smp_165510.1 SmLINC01637-IBu 0.85 4.63e-05 8.00e-04
Smp_165510.1 SmLINC02630-IBu 0.80 2.00e-04 2.90e-03
Smp_165510.1 SmLINC03056-IBu 0.87 1.67e-05 3.00e-04
Smp_165510.1 SmLINC03362-IBu 0.84 7.09e-05 1.10e-03
Smp_165510.1 SmLINC03848-IBu 0.93 3.52e-07 2.46e-05
Smp_165510.1 SmLINC03930-IBu 0.90 3.30e-06 1.00e-04
Smp_165510.1 SmLINC04106-IBu 0.85 5.19e-05 8.00e-04
Smp_165510.1 SmLINC04366-IBu 0.92 7.83e-07 4.31e-05
Smp_165510.1 SmLINC05284-IBu 0.84 6.81e-05 1.00e-03
Smp_165510.1 SmLINC05716-IBu 0.90 3.80e-06 1.00e-04
Smp_165510.1 SmLINC05720-IBu 0.91 1.83e-06 7.91e-05
Smp_165510.1 SmLINC06210-IBu 0.85 4.68e-05 8.00e-04
Smp_165510.1 SmLINC06535-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_165510.1 0.93 4.83e-07 3.21e-05
Smp_165510.1 Smp_035200.3 0.92 8.67e-07 4.82e-05
Smp_036270.4 Smp_165510.1 0.90 2.88e-06 1.00e-04
Smp_077690.1 Smp_165510.1 0.90 4.10e-06 1.00e-04
Smp_083340.4 Smp_165510.1 0.91 1.57e-06 7.34e-05
Smp_111640.1 Smp_165510.1 0.90 3.39e-06 1.00e-04
Smp_112090.1 Smp_165510.1 0.91 1.23e-06 6.18e-05
Smp_182090.1 Smp_165510.1 0.93 4.60e-07 3.10e-05
Smp_184760.1 Smp_165510.1 0.97 6.72e-10 3.94e-07
Smp_185680.1 Smp_165510.1 0.90 2.62e-06 1.00e-04