Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_165360.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_165360.1 0 1.99 1.06 3.05 8.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165360.1 SmLINC04235-IBu 0.83 8.98e-05 1.30e-03
Smp_165360.1 SmLINC04627-IBu 0.81 2.00e-04 2.30e-03
Smp_165360.1 SmLINC06239-IBu 0.91 1.84e-06 7.92e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_165360.1 0.96 5.28e-09 1.49e-06
Smp_165360.1 Smp_000410.1 0.98 2.99e-12 1.30e-08
Smp_165360.1 Smp_000420.1 0.99 4.03e-19 2.60e-13
Smp_165360.1 Smp_033250.1 0.99 1.65e-14 5.38e-10
Smp_165360.1 Smp_058160.1 0.98 1.50e-10 1.51e-07
Smp_165360.1 Smp_077920.1 0.99 2.31e-13 2.69e-09
Smp_165360.1 Smp_130970.1 0.93 1.95e-07 1.71e-05
Smp_165360.1 Smp_131110.2 0.99 2.28e-13 2.67e-09
Smp_165360.1 Smp_144440.1 0.98 5.38e-11 7.89e-08
Smp_165360.1 Smp_155310.1 0.99 2.30e-15 1.56e-10
Smp_165360.1 Smp_155310.2 0.97 7.32e-10 4.17e-07
Smp_175560.1 Smp_165360.1 0.99 2.07e-15 1.47e-10
Smp_165360.1 Smp_191910.1 0.99 1.93e-15 1.39e-10