Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_165300.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165300.1 SmLINC04271-IBu 0.61 1.45e-02 4.55e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165300.1 SmLINC00282-IBu 0.81 2.00e-04 2.50e-03
Smp_165300.1 SmLINC02255-IBu 0.82 1.00e-04 1.80e-03
Smp_165300.1 SmLINC03769-IBu 0.86 3.81e-05 7.00e-04
Smp_165300.1 SmLINC03848-IBu 0.85 4.28e-05 7.00e-04
Smp_165300.1 SmLINC05284-IBu 0.84 6.18e-05 9.00e-04
Smp_165300.1 SmLINC05989-IBu 0.89 5.63e-06 1.00e-04
Smp_165300.1 SmLINC06890-IBu 0.82 1.00e-04 1.80e-03
Smp_165300.1 SmLINC06903-IBu 0.86 3.08e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC05971-IBu 0 -0.67 -3.32 -4.64 -5.79
SmLINC06547-IBu 0 -0.53 -1.74 -3.93 -4.17
SmLINC06907-IBu 0 -0.27 -2.50 -6.73 -7.63
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_162070.1 0 -0.47 -3.26 -7.76 -6.95
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165300.1 SmLINC01234-IBu 0.90 4.85e-06 1.00e-04
Smp_165300.1 SmLINC05971-IBu 0.92 5.30e-07 3.42e-05
Smp_165300.1 SmLINC06547-IBu 0.90 2.60e-06 1.00e-04
Smp_165300.1 SmLINC06907-IBu 0.93 5.13e-07 3.34e-05
Smp_009310.1 Smp_165300.1 0.91 1.53e-06 7.21e-05
Smp_021060.1 Smp_165300.1 0.91 1.43e-06 6.89e-05
Smp_046800.2 Smp_165300.1 0.93 2.49e-07 2.02e-05
Smp_111320.1 Smp_165300.1 0.90 2.58e-06 1.00e-04
Smp_114220.1 Smp_165300.1 0.90 2.65e-06 1.00e-04
Smp_165300.1 Smp_162070.1 0.92 9.39e-07 5.10e-05
Smp_175890.1 Smp_165300.1 0.92 8.17e-07 4.63e-05
Smp_178620.1 Smp_165300.1 0.90 2.51e-06 1.00e-04
Smp_192890.1 Smp_165300.1 0.90 3.63e-06 1.00e-04
Smp_198950.1 Smp_165300.1 0.93 2.64e-07 2.11e-05