Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_165180.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165180.1 SmLINC06892-IBu 0.86 3.57e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_200390.1 0 0.15 -1.24 -5.66 -5.58
Smp_204400.1 0 -0.76 -1.09 -4.78 -5.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165180.1 SmLINC04864-IBu 0.91 1.87e-06 8.31e-05
Smp_004230.1 Smp_165180.1 0.96 4.98e-09 1.44e-06
Smp_026450.1 Smp_165180.1 0.93 2.43e-07 1.99e-05
Smp_033000.1 Smp_165180.1 0.96 5.73e-09 1.58e-06
Smp_036400.2 Smp_165180.1 0.91 1.26e-06 6.29e-05
Smp_037020.1 Smp_165180.1 0.96 8.77e-09 2.09e-06
Smp_165180.1 Smp_058360.2 0.91 1.37e-06 6.68e-05
Smp_060420.3 Smp_165180.1 0.95 2.46e-08 4.18e-06
Smp_100790.1 Smp_165180.1 0.96 4.98e-09 1.44e-06
Smp_114740.1 Smp_165180.1 0.96 4.98e-09 1.44e-06
Smp_150690.2 Smp_165180.1 0.92 1.07e-06 5.61e-05
Smp_188900.1 Smp_165180.1 0.91 1.42e-06 6.85e-05
Smp_165180.1 Smp_190390.1 0.97 3.14e-10 2.43e-07
Smp_200390.1 Smp_165180.1 0.91 1.80e-06 8.09e-05
Smp_204400.1 Smp_165180.1 0.94 1.76e-07 1.59e-05