Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_165150.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_165150.1 0 -2.23 2.21 3.32 3.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_165150.1 SmLINC00171-IBu 0.80 3.00e-04 3.20e-03
Smp_165150.1 SmLINC00477-IBu 0.81 2.00e-04 2.70e-03
Smp_165150.1 SmLINC00548-IBu 0.85 4.59e-05 8.00e-04
Smp_165150.1 SmLINC00554-IBu -0.81 1.00e-04 2.20e-03
Smp_165150.1 SmLINC00556-IBu -0.82 1.00e-04 1.80e-03
Smp_165150.1 SmLINC00633-IBu 0.81 2.00e-04 2.50e-03
Smp_165150.1 SmLINC01066-IBu 0.83 1.00e-04 1.40e-03
Smp_165150.1 SmLINC01139-IBu 0.81 1.00e-04 2.30e-03
Smp_165150.1 SmLINC01231-IBu 0.81 2.00e-04 2.70e-03
Smp_165150.1 SmLINC01435-IBu 0.82 1.00e-04 1.90e-03
Smp_165150.1 SmLINC01538-IBu 0.82 1.00e-04 1.70e-03
Smp_165150.1 SmLINC01746-IBu 0.85 5.73e-05 9.00e-04
Smp_165150.1 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_165150.1 SmLINC02657-IBu -0.82 1.00e-04 2.10e-03
Smp_165150.1 SmLINC03309-IBu 0.85 4.18e-05 7.00e-04
Smp_165150.1 SmLINC03693-IBu 0.83 9.80e-05 1.30e-03
Smp_165150.1 SmLINC04432-IBu 0.87 1.70e-05 3.00e-04
Smp_165150.1 SmLINC04475-IBu 0.91 2.05e-06 8.56e-05
Smp_165150.1 SmLINC04684-IBu 0.81 1.00e-04 2.20e-03
Smp_165150.1 SmLINC05147-IBu 0.82 1.00e-04 1.80e-03
Smp_165150.1 SmLINC05258-IBu 0.80 3.00e-04 3.10e-03
Smp_165150.1 SmLINC05870-IBu 0.83 1.00e-04 1.60e-03
Smp_165150.1 SmLINC06010-IBu 0.81 2.00e-04 2.60e-03
Smp_165150.1 SmLINC06221-IBu 0.85 4.59e-05 8.00e-04
Smp_165150.1 SmLINC06415-IBu 0.80 3.00e-04 3.40e-03
Smp_165150.1 SmLINC06444-IBu 0.82 1.00e-04 1.70e-03
Smp_165150.1 SmLINC06449-IBu 0.82 1.00e-04 2.00e-03
Smp_165150.1 SmLINC06536-IBu 0.83 9.48e-05 1.30e-03
Smp_165150.1 SmLINC06543-IBu 0.85 4.83e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_165150.1 0 -2.23 2.21 3.32 3.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129110.1 Smp_165150.1 0.91 1.95e-06 8.54e-05