Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_164140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_164140.1 0 1.44 1.54 1.73 5.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_164140.1 SmLINC00001-IBu 0.88 1.07e-05 2.00e-04
Smp_164140.1 SmLINC00004-IBu 0.85 4.82e-05 8.00e-04
Smp_164140.1 SmLINC00007-IBu 0.89 8.26e-06 2.00e-04
Smp_164140.1 SmLINC01520-IBu 0.94 1.45e-07 1.33e-05
Smp_164140.1 SmLINC02029-IBu 0.95 5.95e-08 7.18e-06
Smp_164140.1 SmLINC02376-IBu 0.86 2.88e-05 5.00e-04
Smp_164140.1 SmLINC02539-IBu 0.91 1.50e-06 6.87e-05
Smp_164140.1 SmLINC02540-IBu 0.87 1.52e-05 3.00e-04
Smp_164140.1 SmLINC02577-IBu 0.94 1.38e-07 1.28e-05
Smp_164140.1 SmLINC02776-IBu 0.88 1.26e-05 3.00e-04
Smp_164140.1 SmLINC02783-IBu 0.96 5.82e-09 1.49e-06
Smp_164140.1 SmLINC02786-IBu 0.96 1.41e-08 2.70e-06
Smp_164140.1 SmLINC03326-IBu 0.88 8.98e-06 2.00e-04
Smp_164140.1 SmLINC03658-IBu 0.90 2.89e-06 1.00e-04
Smp_164140.1 SmLINC04235-IBu 0.95 5.90e-08 7.14e-06
Smp_164140.1 SmLINC04237-IBu 0.93 4.94e-07 3.12e-05
Smp_164140.1 SmLINC04627-IBu 0.95 1.57e-08 2.89e-06
Smp_164140.1 SmLINC04896-IBu 0.84 8.83e-05 1.20e-03
Smp_164140.1 SmLINC05289-IBu 0.82 1.00e-04 1.90e-03
Smp_164140.1 SmLINC05404-IBu 0.92 1.12e-06 5.56e-05
Smp_164140.1 SmLINC05604-IBu 0.84 8.25e-05 1.20e-03
Smp_164140.1 SmLINC05684-IBu 0.97 2.33e-10 1.84e-07
Smp_164140.1 SmLINC06239-IBu 0.91 1.25e-06 6.02e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164140.1 0 1.44 1.54 1.73 5.01
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_164140.1 0.90 2.55e-06 1.00e-04
Smp_004420.3 Smp_164140.1 0.96 2.54e-09 9.29e-07
Smp_007950.1 Smp_164140.1 0.93 5.11e-07 3.33e-05
Smp_016490.2 Smp_164140.1 0.94 7.05e-08 8.53e-06
Smp_164140.1 Smp_028870.1 0.93 2.82e-07 2.21e-05
Smp_164140.1 Smp_037720.1 0.93 4.91e-07 3.24e-05
Smp_041540.1 Smp_164140.1 0.96 5.41e-09 1.52e-06
Smp_164140.1 Smp_070540.1 0.96 1.15e-08 2.51e-06
Smp_085180.1 Smp_164140.1 0.94 1.55e-07 1.46e-05
Smp_086450.3 Smp_164140.1 0.91 1.37e-06 6.68e-05
Smp_164140.1 Smp_102780.1 0.94 1.21e-07 1.23e-05
Smp_164140.1 Smp_105450.1 0.97 4.64e-10 3.11e-07
Smp_164140.1 Smp_105450.2 0.98 9.81e-12 2.71e-08
Smp_164140.1 Smp_123880.1 0.93 2.87e-07 2.23e-05
Smp_126340.1 Smp_164140.1 0.96 1.07e-08 2.39e-06
Smp_164140.1 Smp_130100.1 0.95 2.49e-08 4.21e-06
Smp_164140.1 Smp_130970.1 0.91 1.50e-06 7.12e-05
Smp_164140.1 Smp_131410.1 0.94 1.67e-07 1.54e-05
Smp_164140.1 Smp_131490.1 0.91 2.39e-06 9.89e-05
Smp_164140.1 Smp_136730.1 0.97 6.03e-10 3.68e-07
Smp_137460.1 Smp_164140.1 0.96 2.87e-09 1.00e-06
Smp_164140.1 Smp_137700.1 0.97 2.27e-10 1.97e-07
Smp_137720.1 Smp_164140.1 0.95 5.62e-08 7.31e-06
Smp_164140.1 Smp_138360.1 0.97 9.63e-10 4.97e-07
Smp_139160.1 Smp_164140.1 0.98 3.83e-11 6.37e-08
Smp_164140.1 Smp_139240.1 0.96 1.05e-08 2.36e-06
Smp_164140.1 Smp_140720.1 0.91 1.57e-06 7.35e-05
Smp_152150.1 Smp_164140.1 0.94 1.52e-07 1.44e-05
Smp_159650.1 Smp_164140.1 0.94 1.46e-07 1.40e-05
Smp_162320.1 Smp_164140.1 0.96 5.99e-09 1.62e-06
Smp_164140.1 Smp_163700.1 0.92 8.21e-07 4.64e-05
Smp_164140.1 Smp_164320.1 0.94 1.76e-07 1.59e-05
Smp_164400.1 Smp_164140.1 0.96 4.59e-09 1.36e-06
Smp_181070.1 Smp_164140.1 0.98 4.65e-11 7.19e-08
Smp_164140.1 Smp_187140.1 0.96 8.90e-09 2.11e-06
Smp_194380.1 Smp_164140.1 0.94 1.64e-07 1.52e-05
Smp_164140.1 Smp_194910.1 0.97 6.58e-10 3.89e-07
Smp_196830.1 Smp_164140.1 0.90 3.80e-06 1.00e-04
Smp_164140.1 Smp_202610.1 0.90 3.12e-06 1.00e-04
Smp_164140.1 Smp_203030.1 0.93 2.53e-07 2.05e-05
Smp_164140.1 Smp_205580.1 0.96 7.84e-09 1.94e-06