Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_164000.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_164000.1 0 -0.87 -1.52 -6.99 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_164000.1 SmLINC04271-IBu 0.65 7.70e-03 2.87e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_164000.1 0 -0.87 -1.52 -6.99 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_164000.1 SmLINC00001-IBu -0.84 8.62e-05 1.20e-03
Smp_164000.1 SmLINC00004-IBu -0.85 4.13e-05 7.00e-04
Smp_164000.1 SmLINC00294-IBu 0.80 3.00e-04 3.10e-03
Smp_164000.1 SmLINC00369-IBu -0.86 2.58e-05 5.00e-04
Smp_164000.1 SmLINC00376-IBu -0.89 6.58e-06 1.00e-04
Smp_164000.1 SmLINC00525-IBu -0.82 1.00e-04 1.90e-03
Smp_164000.1 SmLINC00633-IBu -0.80 2.00e-04 3.10e-03
Smp_164000.1 SmLINC01084-IBu -0.85 5.71e-05 9.00e-04
Smp_164000.1 SmLINC01122-IBu -0.82 1.00e-04 1.90e-03
Smp_164000.1 SmLINC01431-IBu -0.88 1.26e-05 3.00e-04
Smp_164000.1 SmLINC01569-IBu -0.80 2.00e-04 2.80e-03
Smp_164000.1 SmLINC01637-IBu 0.80 3.00e-04 3.30e-03
Smp_164000.1 SmLINC01733-IBu -0.81 2.00e-04 2.50e-03
Smp_164000.1 SmLINC02084-IBu -0.86 3.08e-05 6.00e-04
Smp_164000.1 SmLINC02255-IBu 0.83 1.00e-04 1.40e-03
Smp_164000.1 SmLINC02394-IBu -0.82 1.00e-04 2.10e-03
Smp_164000.1 SmLINC02546-IBu -0.83 1.00e-04 1.60e-03
Smp_164000.1 SmLINC02630-IBu 0.81 2.00e-04 2.40e-03
Smp_164000.1 SmLINC03108-IBu -0.82 1.00e-04 1.90e-03
Smp_164000.1 SmLINC03236-IBu -0.80 3.00e-04 3.30e-03
Smp_164000.1 SmLINC03927-IBu -0.82 1.00e-04 2.00e-03
Smp_164000.1 SmLINC04421-IBu -0.88 1.38e-05 3.00e-04
Smp_164000.1 SmLINC04423-IBu -0.83 1.00e-04 1.60e-03
Smp_164000.1 SmLINC04478-IBu -0.80 2.00e-04 2.80e-03
Smp_164000.1 SmLINC04521-IBu -0.83 1.00e-04 1.50e-03
Smp_164000.1 SmLINC04684-IBu -0.80 2.00e-04 2.80e-03
Smp_164000.1 SmLINC05147-IBu -0.82 1.00e-04 1.80e-03
Smp_164000.1 SmLINC05284-IBu 0.81 1.00e-04 2.20e-03
Smp_164000.1 SmLINC05289-IBu -0.83 1.00e-04 1.40e-03
Smp_164000.1 SmLINC05604-IBu -0.84 6.37e-05 1.00e-03
Smp_164000.1 SmLINC06024-IBu -0.85 5.51e-05 9.00e-04
Smp_164000.1 SmLINC06535-IBu 0.84 6.26e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_164000.1 0 -0.87 -1.52 -6.99 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_164000.1 Smp_015850.2 0.95 4.79e-08 6.56e-06
Smp_033260.1 Smp_164000.1 -0.90 4.70e-06 1.00e-04
Smp_050350.3 Smp_164000.1 -0.90 3.34e-06 1.00e-04
Smp_164000.1 Smp_079420.1 -0.90 2.58e-06 1.00e-04
Smp_164000.1 Smp_137000.2 -0.92 9.91e-07 5.30e-05