Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_163710.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_163710.1 0 0.07 -4.89 -1.71 -2.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_163710.1 SmLINC00037-IBu 0.85 4.18e-05 7.00e-04
Smp_163710.1 SmLINC00133-IBu 0.89 6.80e-06 2.00e-04
Smp_163710.1 SmLINC00282-IBu 0.87 2.34e-05 4.00e-04
Smp_163710.1 SmLINC00784-IBu 0.86 2.55e-05 5.00e-04
Smp_163710.1 SmLINC01486-IBu 0.87 1.66e-05 3.00e-04
Smp_163710.1 SmLINC03056-IBu 0.85 5.40e-05 9.00e-04
Smp_163710.1 SmLINC03362-IBu 0.88 8.86e-06 2.00e-04
Smp_163710.1 SmLINC03848-IBu 0.91 1.63e-06 7.27e-05
Smp_163710.1 SmLINC03930-IBu 0.87 1.54e-05 3.00e-04
Smp_163710.1 SmLINC04075-IBu 0.83 1.00e-04 1.50e-03
Smp_163710.1 SmLINC04178-IBu 0.81 2.00e-04 2.40e-03
Smp_163710.1 SmLINC04366-IBu 0.86 3.04e-05 5.00e-04
Smp_163710.1 SmLINC04940-IBu 0.83 1.00e-04 1.40e-03
Smp_163710.1 SmLINC05716-IBu 0.83 1.00e-04 1.60e-03
Smp_163710.1 SmLINC06210-IBu 0.87 2.45e-05 5.00e-04
Smp_163710.1 SmLINC06535-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_163710.1 0 0.07 -4.89 -1.71 -2.93
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_163710.1 0.94 6.55e-08 8.11e-06
Smp_163710.1 Smp_111640.1 0.90 3.49e-06 1.00e-04
Smp_163710.1 Smp_112090.1 0.90 2.67e-06 1.00e-04
Smp_125070.1 Smp_163710.1 0.91 2.11e-06 9.06e-05
Smp_163710.1 Smp_182090.1 0.98 3.64e-11 6.18e-08
Smp_185680.1 Smp_163710.1 0.94 1.37e-07 1.34e-05