Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_163390.1 Data

Correlation between Smp_163390.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_163390.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_163390.1 SmLINC02039-IBu 0.88 1.24e-05 3.00e-04
Smp_163390.1 SmLINC05989-IBu 0.85 4.13e-05 7.00e-04

Correlation between Smp_163390.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_163390.1 0.94 8.41e-08 9.61e-06
Smp_055770.1 Smp_163390.1 0.92 5.95e-07 3.71e-05
Smp_163390.1 Smp_061940.2 0.91 2.18e-06 9.24e-05
Smp_163390.1 Smp_071380.2 0.94 1.02e-07 1.10e-05
Smp_163390.1 Smp_152780.1 0.90 3.79e-06 1.00e-04