Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_163380.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_163380.1 0 -3.52 -3.53 -0.30 1.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_163380.1 SmLINC00001-IBu 0.92 6.02e-07 3.58e-05
Smp_163380.1 SmLINC00004-IBu 0.91 2.26e-06 9.18e-05
Smp_163380.1 SmLINC00007-IBu 0.82 1.00e-04 1.70e-03
Smp_163380.1 SmLINC00294-IBu -0.82 1.00e-04 1.90e-03
Smp_163380.1 SmLINC01520-IBu 0.91 2.48e-06 9.79e-05
Smp_163380.1 SmLINC02029-IBu 0.88 1.01e-05 2.00e-04
Smp_163380.1 SmLINC02376-IBu 0.89 6.54e-06 1.00e-04
Smp_163380.1 SmLINC02394-IBu 0.87 1.96e-05 4.00e-04
Smp_163380.1 SmLINC02539-IBu 0.91 1.81e-06 7.83e-05
Smp_163380.1 SmLINC02540-IBu 0.88 1.21e-05 3.00e-04
Smp_163380.1 SmLINC02577-IBu 0.92 9.12e-07 4.80e-05
Smp_163380.1 SmLINC02783-IBu 0.91 2.42e-06 9.62e-05
Smp_163380.1 SmLINC02786-IBu 0.83 9.87e-05 1.40e-03
Smp_163380.1 SmLINC03326-IBu 0.91 2.44e-06 9.68e-05
Smp_163380.1 SmLINC03658-IBu 0.82 1.00e-04 1.90e-03
Smp_163380.1 SmLINC04235-IBu 0.92 5.23e-07 3.24e-05
Smp_163380.1 SmLINC04237-IBu 0.86 3.70e-05 6.00e-04
Smp_163380.1 SmLINC04421-IBu 0.81 2.00e-04 2.30e-03
Smp_163380.1 SmLINC04423-IBu 0.80 3.00e-04 3.40e-03
Smp_163380.1 SmLINC04627-IBu 0.91 2.44e-06 9.68e-05
Smp_163380.1 SmLINC05289-IBu 0.87 1.93e-05 4.00e-04
Smp_163380.1 SmLINC05404-IBu 0.87 2.36e-05 4.00e-04
Smp_163380.1 SmLINC05604-IBu 0.87 1.92e-05 4.00e-04
Smp_163380.1 SmLINC05684-IBu 0.91 1.90e-06 8.11e-05
Smp_163380.1 SmLINC06024-IBu 0.84 8.49e-05 1.20e-03
Smp_163380.1 SmLINC06239-IBu 0.86 2.79e-05 5.00e-04
Smp_163380.1 SmLINC06490-IBu -0.84 8.00e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163380.1 0 -3.52 -3.53 -0.30 1.50
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_163380.1 0.91 2.07e-06 8.93e-05
Smp_007950.1 Smp_163380.1 0.91 2.34e-06 9.72e-05
Smp_016490.2 Smp_163380.1 0.94 8.37e-08 9.58e-06
Smp_163380.1 Smp_028870.1 0.94 8.82e-08 9.93e-06
Smp_037720.1 Smp_163380.1 0.90 4.68e-06 1.00e-04
Smp_083430.1 Smp_163380.1 0.90 4.41e-06 1.00e-04
Smp_085180.1 Smp_163380.1 0.94 1.28e-07 1.28e-05
Smp_163380.1 Smp_102780.1 0.94 1.09e-07 1.15e-05
Smp_163380.1 Smp_105450.2 0.90 2.70e-06 1.00e-04
Smp_123880.1 Smp_163380.1 0.93 4.59e-07 3.09e-05
Smp_163380.1 Smp_130100.1 0.94 1.25e-07 1.26e-05
Smp_163380.1 Smp_131410.1 0.93 3.75e-07 2.69e-05
Smp_163380.1 Smp_131490.1 0.93 1.94e-07 1.71e-05
Smp_136730.1 Smp_163380.1 0.90 2.69e-06 1.00e-04
Smp_163380.1 Smp_137700.1 0.90 3.05e-06 1.00e-04
Smp_137720.1 Smp_163380.1 0.93 2.34e-07 1.94e-05
Smp_137810.1 Smp_163380.1 0.90 4.35e-06 1.00e-04
Smp_139160.1 Smp_163380.1 0.90 4.06e-06 1.00e-04
Smp_139240.1 Smp_163380.1 0.92 5.92e-07 3.69e-05
Smp_140720.1 Smp_163380.1 0.91 1.73e-06 7.87e-05
Smp_155570.1 Smp_163380.1 0.92 6.08e-07 3.76e-05
Smp_159650.1 Smp_163380.1 0.93 3.85e-07 2.74e-05
Smp_162320.1 Smp_163380.1 0.94 1.39e-07 1.35e-05
Smp_163700.1 Smp_163380.1 0.91 1.32e-06 6.52e-05
Smp_164320.1 Smp_163380.1 0.93 1.94e-07 1.71e-05
Smp_181070.1 Smp_163380.1 0.92 5.34e-07 3.44e-05
Smp_187140.1 Smp_163380.1 0.93 3.50e-07 2.56e-05
Smp_194380.1 Smp_163380.1 0.91 1.20e-06 6.08e-05
Smp_163380.1 Smp_194910.1 0.93 3.44e-07 2.53e-05
Smp_196830.1 Smp_163380.1 0.90 4.09e-06 1.00e-04
Smp_163380.1 Smp_202610.1 0.93 2.11e-07 1.80e-05
Smp_203030.1 Smp_163380.1 0.94 1.61e-07 1.50e-05
Smp_205580.1 Smp_163380.1 0.93 3.18e-07 2.40e-05