Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_163170.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_163170.1 0 1.14 -1.52 1.95 4.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_163170.1 SmLINC00001-IBu 0.85 4.70e-05 8.00e-04
Smp_163170.1 SmLINC00004-IBu 0.82 1.00e-04 1.80e-03
Smp_163170.1 SmLINC00007-IBu 0.96 1.44e-08 2.73e-06
Smp_163170.1 SmLINC01520-IBu 0.93 4.53e-07 2.93e-05
Smp_163170.1 SmLINC02029-IBu 0.89 6.41e-06 1.00e-04
Smp_163170.1 SmLINC02394-IBu 0.82 1.00e-04 1.80e-03
Smp_163170.1 SmLINC02539-IBu 0.92 7.80e-07 4.30e-05
Smp_163170.1 SmLINC02540-IBu 0.92 7.61e-07 4.23e-05
Smp_163170.1 SmLINC02577-IBu 0.93 4.66e-07 2.99e-05
Smp_163170.1 SmLINC02776-IBu 0.95 1.66e-08 3.00e-06
Smp_163170.1 SmLINC02783-IBu 0.91 1.32e-06 6.26e-05
Smp_163170.1 SmLINC02786-IBu 0.90 3.90e-06 1.00e-04
Smp_163170.1 SmLINC03326-IBu 0.90 3.74e-06 1.00e-04
Smp_163170.1 SmLINC03658-IBu 0.80 2.00e-04 2.80e-03
Smp_163170.1 SmLINC04235-IBu 0.83 1.00e-04 1.60e-03
Smp_163170.1 SmLINC04237-IBu 0.91 1.61e-06 7.22e-05
Smp_163170.1 SmLINC04627-IBu 0.86 2.78e-05 5.00e-04
Smp_163170.1 SmLINC05289-IBu 0.83 9.96e-05 1.40e-03
Smp_163170.1 SmLINC05404-IBu 0.83 1.00e-04 1.40e-03
Smp_163170.1 SmLINC05604-IBu 0.82 1.00e-04 2.10e-03
Smp_163170.1 SmLINC05684-IBu 0.92 8.60e-07 4.61e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_163170.1 0 1.14 -1.52 1.95 4.18
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_163170.1 0.93 2.99e-07 2.30e-05
Smp_037720.1 Smp_163170.1 0.91 1.21e-06 6.13e-05
Smp_070540.1 Smp_163170.1 0.92 9.15e-07 5.01e-05
Smp_083430.1 Smp_163170.1 0.90 2.58e-06 1.00e-04
Smp_105450.1 Smp_163170.1 0.90 3.51e-06 1.00e-04
Smp_105450.2 Smp_163170.1 0.90 3.31e-06 1.00e-04
Smp_123880.1 Smp_163170.1 0.92 1.11e-06 5.76e-05
Smp_126340.1 Smp_163170.1 0.91 1.29e-06 6.39e-05
Smp_163170.1 Smp_131410.1 0.92 1.16e-06 5.92e-05
Smp_136730.1 Smp_163170.1 0.93 4.96e-07 3.26e-05
Smp_137810.1 Smp_163170.1 0.91 1.38e-06 6.70e-05
Smp_139240.1 Smp_163170.1 0.92 6.12e-07 3.78e-05
Smp_163700.1 Smp_163170.1 0.92 6.12e-07 3.78e-05
Smp_187140.1 Smp_163170.1 0.92 1.02e-06 5.43e-05
Smp_194380.1 Smp_163170.1 0.93 2.92e-07 2.26e-05
Smp_163170.1 Smp_194910.1 0.91 1.89e-06 8.35e-05
Smp_196830.1 Smp_163170.1 0.92 6.41e-07 3.90e-05
Smp_205580.1 Smp_163170.1 0.91 1.49e-06 7.08e-05