Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_162850.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_162850.1 SmLINC05684-IBu -0.58 2.25e-02 6.26e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_162850.1 SmLINC02026-IBu 0.89 6.45e-06 1.00e-04
Smp_162850.1 SmLINC06490-IBu 0.96 6.40e-09 1.58e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13
Smp_183870.1 0 -0.34 -1.88 -9.35 -11.39
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_205470.1 0 0.16 -0.98 -10.60 -7.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183870.1 Smp_162850.1 0.91 1.65e-06 7.61e-05
Smp_194060.1 Smp_162850.1 0.90 2.54e-06 1.00e-04
Smp_205470.1 Smp_162850.1 0.94 9.45e-08 1.04e-05