Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_162580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_162580.1 0 1.31 -3.23 3.63 5.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_162580.1 SmLINC00001-IBu 0.93 1.98e-07 1.64e-05
Smp_162580.1 SmLINC00004-IBu 0.89 6.69e-06 1.00e-04
Smp_162580.1 SmLINC00007-IBu 0.93 4.52e-07 2.93e-05
Smp_162580.1 SmLINC00266-IBu 0.90 2.80e-06 1.00e-04
Smp_162580.1 SmLINC00369-IBu 0.83 1.00e-04 1.50e-03
Smp_162580.1 SmLINC00525-IBu 0.81 2.00e-04 2.60e-03
Smp_162580.1 SmLINC01084-IBu 0.84 8.68e-05 1.20e-03
Smp_162580.1 SmLINC01431-IBu 0.81 2.00e-04 2.30e-03
Smp_162580.1 SmLINC01520-IBu 0.94 1.38e-07 1.28e-05
Smp_162580.1 SmLINC02029-IBu 0.86 3.05e-05 5.00e-04
Smp_162580.1 SmLINC02084-IBu 0.86 3.17e-05 6.00e-04
Smp_162580.1 SmLINC02376-IBu 0.81 2.00e-04 2.60e-03
Smp_162580.1 SmLINC02394-IBu 0.95 2.00e-08 3.42e-06
Smp_162580.1 SmLINC02539-IBu 0.96 6.58e-09 1.61e-06
Smp_162580.1 SmLINC02540-IBu 0.98 5.75e-12 1.76e-08
Smp_162580.1 SmLINC02577-IBu 0.95 4.92e-08 6.31e-06
Smp_162580.1 SmLINC02776-IBu 0.91 1.46e-06 6.72e-05
Smp_162580.1 SmLINC02783-IBu 0.90 2.90e-06 1.00e-04
Smp_162580.1 SmLINC02786-IBu 0.80 2.00e-04 2.90e-03
Smp_162580.1 SmLINC03326-IBu 0.94 1.29e-07 1.22e-05
Smp_162580.1 SmLINC03658-IBu 0.81 1.00e-04 2.10e-03
Smp_162580.1 SmLINC03927-IBu 0.80 3.00e-04 3.40e-03
Smp_162580.1 SmLINC04235-IBu 0.82 1.00e-04 1.90e-03
Smp_162580.1 SmLINC04237-IBu 0.91 2.28e-06 9.24e-05
Smp_162580.1 SmLINC04421-IBu 0.87 2.31e-05 4.00e-04
Smp_162580.1 SmLINC04627-IBu 0.86 2.92e-05 5.00e-04
Smp_162580.1 SmLINC05289-IBu 0.95 3.23e-08 4.73e-06
Smp_162580.1 SmLINC05604-IBu 0.89 8.28e-06 2.00e-04
Smp_162580.1 SmLINC05684-IBu 0.89 6.30e-06 1.00e-04
Smp_162580.1 SmLINC06024-IBu 0.80 3.00e-04 3.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_020080.2 0 6.03 4.29 10.17 11.72
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_162580.1 0 1.31 -3.23 3.63 5.05
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_162580.1 0.96 4.57e-09 1.36e-06
Smp_016490.2 Smp_162580.1 0.91 1.31e-06 6.48e-05
Smp_162580.1 Smp_020080.2 0.93 1.96e-07 1.71e-05
Smp_162580.1 Smp_028870.1 0.92 5.22e-07 3.38e-05
Smp_162580.1 Smp_037720.1 0.93 2.76e-07 2.18e-05
Smp_083430.1 Smp_162580.1 0.98 4.63e-12 1.71e-08
Smp_085180.1 Smp_162580.1 0.93 2.62e-07 2.10e-05
Smp_162580.1 Smp_102780.1 0.93 4.26e-07 2.94e-05
Smp_162580.1 Smp_123880.1 0.96 8.42e-09 2.03e-06
Smp_162580.1 Smp_131410.1 0.95 1.58e-08 3.10e-06
Smp_162580.1 Smp_131490.1 0.92 6.90e-07 4.11e-05
Smp_162580.1 Smp_136730.1 0.90 3.42e-06 1.00e-04
Smp_137720.1 Smp_162580.1 0.92 9.61e-07 5.19e-05
Smp_162580.1 Smp_137810.1 0.94 7.84e-08 9.16e-06
Smp_162580.1 Smp_139240.1 0.93 2.08e-07 1.79e-05
Smp_162580.1 Smp_140720.1 0.90 4.30e-06 1.00e-04
Smp_162580.1 Smp_155570.1 0.94 7.72e-08 9.07e-06
Smp_162320.1 Smp_162580.1 0.91 1.48e-06 7.04e-05
Smp_162580.1 Smp_163700.1 0.96 3.12e-09 1.06e-06
Smp_162580.1 Smp_164320.1 0.94 9.23e-08 1.02e-05
Smp_162580.1 Smp_187140.1 0.93 3.19e-07 2.40e-05
Smp_194380.1 Smp_162580.1 0.96 8.19e-09 2.00e-06
Smp_162580.1 Smp_194910.1 0.91 2.27e-06 9.51e-05
Smp_196830.1 Smp_162580.1 0.97 8.86e-10 4.71e-07
Smp_162580.1 Smp_202610.1 0.95 4.46e-08 6.24e-06
Smp_162580.1 Smp_203030.1 0.90 4.55e-06 1.00e-04
Smp_162580.1 Smp_205580.1 0.92 5.47e-07 3.49e-05