Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_161820.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_161820.1 0 -0.36 -0.21 2.51 3.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161820.1 SmLINC00001-IBu 0.86 3.53e-05 6.00e-04
Smp_161820.1 SmLINC00004-IBu 0.89 5.84e-06 1.00e-04
Smp_161820.1 SmLINC00376-IBu 0.81 2.00e-04 2.60e-03
Smp_161820.1 SmLINC00525-IBu 0.80 3.00e-04 3.10e-03
Smp_161820.1 SmLINC01084-IBu 0.83 1.00e-04 1.40e-03
Smp_161820.1 SmLINC01431-IBu 0.86 3.84e-05 7.00e-04
Smp_161820.1 SmLINC01733-IBu 0.85 4.29e-05 7.00e-04
Smp_161820.1 SmLINC02255-IBu -0.84 7.28e-05 1.10e-03
Smp_161820.1 SmLINC02394-IBu 0.80 2.00e-04 2.80e-03
Smp_161820.1 SmLINC02546-IBu 0.80 2.00e-04 3.00e-03
Smp_161820.1 SmLINC02630-IBu -0.83 9.24e-05 1.30e-03
Smp_161820.1 SmLINC04235-IBu 0.82 1.00e-04 2.10e-03
Smp_161820.1 SmLINC04421-IBu 0.81 1.00e-04 2.20e-03
Smp_161820.1 SmLINC04423-IBu 0.89 5.48e-06 1.00e-04
Smp_161820.1 SmLINC06024-IBu 0.86 3.82e-05 7.00e-04
Smp_161820.1 SmLINC06535-IBu -0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_161820.1 0 -0.36 -0.21 2.51 3.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_161820.1 0.93 2.84e-07 2.22e-05
Smp_024180.1 Smp_161820.1 0.92 1.09e-06 5.68e-05
Smp_024180.2 Smp_161820.1 0.91 2.22e-06 9.36e-05
Smp_050350.3 Smp_161820.1 0.91 1.57e-06 7.35e-05
Smp_052280.2 Smp_161820.1 0.90 3.36e-06 1.00e-04
Smp_094050.1 Smp_161820.1 0.93 4.68e-07 3.14e-05