Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_161650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_161650.1 0 4.64 4.26 7.15 5.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161650.1 SmLINC00171-IBu 0.81 2.00e-04 2.40e-03
Smp_161650.1 SmLINC00477-IBu 0.91 1.76e-06 7.67e-05
Smp_161650.1 SmLINC00484-IBu 0.91 1.75e-06 7.66e-05
Smp_161650.1 SmLINC00548-IBu 0.80 2.00e-04 3.00e-03
Smp_161650.1 SmLINC00633-IBu 0.80 3.00e-04 3.20e-03
Smp_161650.1 SmLINC00769-IBu 0.81 1.00e-04 2.30e-03
Smp_161650.1 SmLINC01066-IBu 0.87 1.89e-05 4.00e-04
Smp_161650.1 SmLINC01139-IBu 0.84 6.00e-05 9.00e-04
Smp_161650.1 SmLINC01171-IBu 0.84 8.65e-05 1.20e-03
Smp_161650.1 SmLINC01433-IBu 0.90 3.67e-06 1.00e-04
Smp_161650.1 SmLINC01435-IBu 0.86 2.99e-05 5.00e-04
Smp_161650.1 SmLINC01538-IBu 0.83 9.95e-05 1.40e-03
Smp_161650.1 SmLINC01746-IBu 0.81 1.00e-04 2.20e-03
Smp_161650.1 SmLINC01822-IBu 0.90 2.58e-06 1.00e-04
Smp_161650.1 SmLINC02581-IBu 0.92 7.52e-07 4.19e-05
Smp_161650.1 SmLINC03236-IBu 0.83 1.00e-04 1.60e-03
Smp_161650.1 SmLINC03309-IBu 0.86 3.50e-05 6.00e-04
Smp_161650.1 SmLINC03542-IBu 0.91 1.39e-06 6.49e-05
Smp_161650.1 SmLINC03693-IBu 0.90 3.19e-06 1.00e-04
Smp_161650.1 SmLINC04054-IBu 0.92 1.16e-06 5.73e-05
Smp_161650.1 SmLINC04345-IBu 0.88 1.02e-05 2.00e-04
Smp_161650.1 SmLINC04475-IBu 0.85 4.60e-05 8.00e-04
Smp_161650.1 SmLINC04481-IBu 0.80 3.00e-04 3.10e-03
Smp_161650.1 SmLINC04521-IBu 0.80 2.00e-04 2.90e-03
Smp_161650.1 SmLINC04663-IBu 0.87 1.62e-05 3.00e-04
Smp_161650.1 SmLINC04684-IBu 0.81 2.00e-04 2.60e-03
Smp_161650.1 SmLINC04747-IBu 0.88 1.29e-05 3.00e-04
Smp_161650.1 SmLINC04759-IBu 0.84 7.53e-05 1.10e-03
Smp_161650.1 SmLINC04769-IBu 0.91 1.56e-06 7.06e-05
Smp_161650.1 SmLINC05009-IBu 0.93 2.04e-07 1.68e-05
Smp_161650.1 SmLINC05147-IBu 0.80 3.00e-04 3.20e-03
Smp_161650.1 SmLINC05171-IBu 0.91 2.43e-06 9.67e-05
Smp_161650.1 SmLINC05258-IBu 0.84 7.05e-05 1.00e-03
Smp_161650.1 SmLINC05632-IBu 0.80 3.00e-04 3.20e-03
Smp_161650.1 SmLINC05990-IBu 0.84 8.04e-05 1.20e-03
Smp_161650.1 SmLINC06007-IBu 0.88 1.19e-05 3.00e-04
Smp_161650.1 SmLINC06010-IBu 0.86 3.15e-05 6.00e-04
Smp_161650.1 SmLINC06221-IBu 0.92 6.79e-07 3.90e-05
Smp_161650.1 SmLINC06418-IBu 0.82 1.00e-04 2.10e-03
Smp_161650.1 SmLINC06444-IBu 0.84 7.68e-05 1.10e-03
Smp_161650.1 SmLINC06449-IBu 0.88 1.11e-05 2.00e-04
Smp_161650.1 SmLINC06536-IBu 0.85 4.67e-05 8.00e-04
Smp_161650.1 SmLINC06538-IBu 0.88 1.39e-05 3.00e-04
Smp_161650.1 SmLINC06543-IBu 0.88 1.19e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_161650.1 0 4.64 4.26 7.15 5.86
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 Smp_161650.1 0.92 9.02e-07 4.96e-05
Smp_014780.1 Smp_161650.1 0.93 4.44e-07 3.02e-05
Smp_017610.1 Smp_161650.1 0.90 4.16e-06 1.00e-04
Smp_045200.1 Smp_161650.1 0.90 3.40e-06 1.00e-04
Smp_082580.1 Smp_161650.1 0.91 1.39e-06 6.75e-05
Smp_084270.1 Smp_161650.1 0.91 1.41e-06 6.83e-05
Smp_105730.1 Smp_161650.1 0.92 7.70e-07 4.44e-05
Smp_118560.1 Smp_161650.1 0.94 6.25e-08 7.86e-06
Smp_123200.1 Smp_161650.1 0.90 3.08e-06 1.00e-04
Smp_125210.1 Smp_161650.1 0.91 2.22e-06 9.37e-05
Smp_128510.1 Smp_161650.1 0.90 4.22e-06 1.00e-04
Smp_131840.1 Smp_161650.1 0.91 1.27e-06 6.35e-05
Smp_134960.1 Smp_161650.1 0.92 1.12e-06 5.78e-05
Smp_141480.1 Smp_161650.1 0.94 7.58e-08 8.96e-06
Smp_154180.1 Smp_161650.1 0.91 2.04e-06 8.82e-05
Smp_163940.1 Smp_161650.1 0.90 2.88e-06 1.00e-04
Smp_172520.1 Smp_161650.1 0.91 1.27e-06 6.32e-05
Smp_175020.1 Smp_161650.1 0.92 1.05e-06 5.53e-05
Smp_194960.1 Smp_161650.1 0.91 1.24e-06 6.24e-05
Smp_194970.1 Smp_161650.1 0.92 5.84e-07 3.66e-05
Smp_194980.1 Smp_161650.1 0.93 3.48e-07 2.55e-05
Smp_197400.1 Smp_161650.1 0.91 1.47e-06 7.00e-05
Smp_200750.1 Smp_161650.1 0.90 4.14e-06 1.00e-04