Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_161340.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01242-IBu 0 8.59 8.04 9.02 10.28
Smp_161340.1 0 3.74 -1.93 5.74 7.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161340.1 SmLINC01242-IBu 0.7 3.40e-03 1.60e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_161340.1 0 3.74 -1.93 5.74 7.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161340.1 SmLINC00001-IBu 0.88 1.12e-05 2.00e-04
Smp_161340.1 SmLINC00004-IBu 0.90 4.09e-06 1.00e-04
Smp_161340.1 SmLINC00007-IBu 0.86 3.14e-05 6.00e-04
Smp_161340.1 SmLINC00376-IBu 0.81 2.00e-04 2.40e-03
Smp_161340.1 SmLINC00525-IBu 0.88 1.47e-05 3.00e-04
Smp_161340.1 SmLINC01084-IBu 0.84 8.47e-05 1.20e-03
Smp_161340.1 SmLINC01432-IBu 0.83 1.00e-04 1.40e-03
Smp_161340.1 SmLINC01520-IBu 0.92 9.62e-07 4.99e-05
Smp_161340.1 SmLINC02029-IBu 0.92 8.67e-07 4.64e-05
Smp_161340.1 SmLINC02376-IBu 0.83 9.24e-05 1.30e-03
Smp_161340.1 SmLINC02394-IBu 0.81 2.00e-04 2.50e-03
Smp_161340.1 SmLINC02539-IBu 0.92 1.18e-06 5.79e-05
Smp_161340.1 SmLINC02540-IBu 0.86 3.28e-05 6.00e-04
Smp_161340.1 SmLINC02545-IBu 0.90 4.86e-06 1.00e-04
Smp_161340.1 SmLINC02577-IBu 0.90 4.22e-06 1.00e-04
Smp_161340.1 SmLINC02783-IBu 0.84 8.24e-05 1.20e-03
Smp_161340.1 SmLINC02786-IBu 0.85 4.96e-05 8.00e-04
Smp_161340.1 SmLINC03326-IBu 0.82 1.00e-04 1.70e-03
Smp_161340.1 SmLINC03658-IBu 0.89 5.76e-06 1.00e-04
Smp_161340.1 SmLINC03927-IBu 0.86 3.56e-05 6.00e-04
Smp_161340.1 SmLINC04235-IBu 0.88 1.01e-05 2.00e-04
Smp_161340.1 SmLINC04421-IBu 0.94 1.16e-07 1.14e-05
Smp_161340.1 SmLINC04423-IBu 0.85 5.19e-05 8.00e-04
Smp_161340.1 SmLINC04896-IBu 0.89 8.82e-06 2.00e-04
Smp_161340.1 SmLINC05289-IBu 0.89 6.00e-06 1.00e-04
Smp_161340.1 SmLINC05404-IBu 0.88 1.35e-05 3.00e-04
Smp_161340.1 SmLINC05604-IBu 0.96 9.93e-09 2.12e-06
Smp_161340.1 SmLINC05684-IBu 0.88 9.74e-06 2.00e-04
Smp_161340.1 SmLINC06024-IBu 0.83 9.37e-05 1.30e-03
Smp_161340.1 SmLINC06239-IBu 0.80 3.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_161340.1 0 3.74 -1.93 5.74 7.30
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 Smp_161340.1 0.90 3.57e-06 1.00e-04
Smp_161340.1 Smp_037720.1 0.95 5.57e-08 7.26e-06
Smp_161340.1 Smp_130100.1 0.91 2.36e-06 9.78e-05
Smp_137810.1 Smp_161340.1 0.94 1.10e-07 1.15e-05
Smp_140720.1 Smp_161340.1 0.95 5.62e-08 7.31e-06
Smp_155570.1 Smp_161340.1 0.92 1.06e-06 5.58e-05
Smp_196830.1 Smp_161340.1 0.92 8.88e-07 4.90e-05
Smp_161340.1 Smp_202610.1 0.90 4.04e-06 1.00e-04
Smp_203030.1 Smp_161340.1 0.92 8.93e-07 4.93e-05