Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_161280.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04430-IBu 0 1.35 4.06 1.4 0.01
Smp_161280.1 0 1.17 1.48 -9.0 -4.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161280.1 SmLINC04430-IBu 0.67 5.40e-03 2.22e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_161280.1 0 1.17 1.48 -9.00 -4.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161280.1 SmLINC00372-IBu 0.89 8.12e-06 2.00e-04
Smp_161280.1 SmLINC01316-IBu 0.92 7.38e-07 4.13e-05
Smp_161280.1 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_161280.1 SmLINC02646-IBu 0.86 2.52e-05 5.00e-04
Smp_161280.1 SmLINC04074-IBu 0.88 9.92e-06 2.00e-04
Smp_161280.1 SmLINC06646-IBu 0.95 4.57e-08 6.00e-06
Smp_161280.1 SmLINC06836-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161280.1 Smp_017650.1 0.92 8.20e-07 4.64e-05
Smp_161280.1 Smp_032120.1 0.90 2.64e-06 1.00e-04
Smp_161280.1 Smp_059340.3 0.98 1.58e-10 1.56e-07
Smp_059530.1 Smp_161280.1 0.95 1.98e-08 3.62e-06
Smp_161280.1 Smp_083380.2 0.92 7.57e-07 4.38e-05
Smp_161280.1 Smp_084940.2 0.90 2.63e-06 1.00e-04
Smp_103540.1 Smp_161280.1 0.92 5.86e-07 3.67e-05
Smp_161280.1 Smp_168800.1 0.92 6.50e-07 3.94e-05