Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_161270.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_161270.1 0 1.27 1.64 -8.43 -8.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161270.1 SmLINC04271-IBu 0.53 4.00e-02 9.48e-02
Smp_161270.1 SmLINC04430-IBu 0.73 1.90e-03 1.04e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_161270.1 0 1.27 1.64 -8.43 -8.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161270.1 SmLINC00372-IBu 0.90 4.58e-06 1.00e-04
Smp_161270.1 SmLINC01316-IBu 0.90 3.56e-06 1.00e-04
Smp_161270.1 SmLINC02646-IBu 0.86 3.48e-05 6.00e-04
Smp_161270.1 SmLINC03395-IBu 0.80 2.00e-04 2.80e-03
Smp_161270.1 SmLINC04074-IBu 0.89 7.63e-06 2.00e-04
Smp_161270.1 SmLINC06490-IBu 0.83 9.14e-05 1.30e-03
Smp_161270.1 SmLINC06646-IBu 0.93 3.41e-07 2.41e-05
Smp_161270.1 SmLINC06700-IBu 0.80 3.00e-04 3.10e-03
Smp_161270.1 SmLINC06836-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_161270.1 Smp_017650.1 0.90 3.96e-06 1.00e-04
Smp_161270.1 Smp_032120.1 0.90 2.67e-06 1.00e-04
Smp_161270.1 Smp_036270.3 0.90 4.16e-06 1.00e-04
Smp_161270.1 Smp_059340.3 0.96 3.72e-09 1.19e-06
Smp_059530.1 Smp_161270.1 0.92 1.00e-06 5.34e-05
Smp_161270.1 Smp_062070.1 0.90 3.57e-06 1.00e-04
Smp_103540.1 Smp_161270.1 0.92 7.79e-07 4.47e-05
Smp_168800.1 Smp_161270.1 0.94 6.68e-08 8.22e-06
Smp_200120.1 Smp_161270.1 0.92 8.09e-07 4.60e-05