Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160860.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_160860.1 0 -2.24 1.45 3.21 3.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160860.1 SmLINC00282-IBu -0.81 2.00e-04 2.30e-03
Smp_160860.1 SmLINC00554-IBu -0.89 8.05e-06 2.00e-04
Smp_160860.1 SmLINC00556-IBu -0.86 2.87e-05 5.00e-04
Smp_160860.1 SmLINC01431-IBu 0.80 3.00e-04 3.30e-03
Smp_160860.1 SmLINC01746-IBu 0.81 2.00e-04 2.50e-03
Smp_160860.1 SmLINC02255-IBu -0.85 5.33e-05 8.00e-04
Smp_160860.1 SmLINC02546-IBu 0.80 3.00e-04 3.10e-03
Smp_160860.1 SmLINC02657-IBu -0.87 1.75e-05 3.00e-04
Smp_160860.1 SmLINC03309-IBu 0.80 3.00e-04 3.30e-03
Smp_160860.1 SmLINC03849-IBu -0.80 3.00e-04 3.20e-03
Smp_160860.1 SmLINC04432-IBu 0.81 2.00e-04 2.50e-03
Smp_160860.1 SmLINC04475-IBu 0.85 4.33e-05 7.00e-04
Smp_160860.1 SmLINC05147-IBu 0.80 2.00e-04 2.70e-03
Smp_160860.1 SmLINC05284-IBu -0.80 3.00e-04 3.40e-03
Smp_160860.1 SmLINC06221-IBu 0.81 2.00e-04 2.50e-03
Smp_160860.1 SmLINC06449-IBu 0.81 2.00e-04 2.40e-03
Smp_160860.1 SmLINC06535-IBu -0.84 7.47e-05 1.10e-03
Smp_160860.1 SmLINC06543-IBu 0.80 3.00e-04 3.30e-03