Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160410.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160410.1 SmLINC00001-IBu -0.67 5.70e-03 2.32e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160410.1 SmLINC00372-IBu 0.84 6.50e-05 1.00e-03
Smp_160410.1 SmLINC01316-IBu 0.92 8.44e-07 4.55e-05
Smp_160410.1 SmLINC05559-IBu 0.83 9.53e-05 1.30e-03
Smp_160410.1 SmLINC06490-IBu 0.82 1.00e-04 1.80e-03
Smp_160410.1 SmLINC06836-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC03227-IBu 0 -1.25 0.94 -11.22 -11.22
SmLINC04007-IBu 0 -1.63 0.45 -8.95 -8.95
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
SmLINC06953-IBu 0 -0.76 1.41 -2.13 -3.45
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_071640.2 0 -0.94 -0.54 -4.50 -4.39
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160410.1 SmLINC01316-IBu 0.92 8.44e-07 4.73e-05
Smp_160410.1 SmLINC03227-IBu 0.92 8.12e-07 4.61e-05
Smp_160410.1 SmLINC04007-IBu 0.90 4.64e-06 1.00e-04
Smp_160410.1 SmLINC06839-IBu 0.92 7.30e-07 4.28e-05
Smp_160410.1 SmLINC06953-IBu 0.90 3.25e-06 1.00e-04
Smp_023140.1 Smp_160410.1 0.91 2.02e-06 8.78e-05
Smp_160410.1 Smp_069160.2 0.90 4.86e-06 1.00e-04
Smp_071640.2 Smp_160410.1 0.91 1.99e-06 8.67e-05
Smp_113660.1 Smp_160410.1 0.90 4.23e-06 1.00e-04
Smp_123870.1 Smp_160410.1 0.90 3.65e-06 1.00e-04
Smp_152900.1 Smp_160410.1 0.91 2.14e-06 9.15e-05