Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160230.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160230.1 SmLINC00037-IBu 0.86 3.76e-05 6.00e-04
Smp_160230.1 SmLINC00133-IBu 0.85 4.29e-05 7.00e-04
Smp_160230.1 SmLINC00282-IBu 0.88 1.07e-05 2.00e-04
Smp_160230.1 SmLINC00294-IBu 0.84 6.30e-05 1.00e-03
Smp_160230.1 SmLINC00376-IBu -0.84 8.88e-05 1.20e-03
Smp_160230.1 SmLINC01084-IBu -0.81 1.00e-04 2.20e-03
Smp_160230.1 SmLINC01431-IBu -0.80 2.00e-04 2.80e-03
Smp_160230.1 SmLINC01462-IBu 0.81 2.00e-04 2.30e-03
Smp_160230.1 SmLINC01486-IBu 0.83 8.99e-05 1.30e-03
Smp_160230.1 SmLINC01637-IBu 0.87 2.42e-05 5.00e-04
Smp_160230.1 SmLINC02255-IBu 0.94 6.47e-08 7.61e-06
Smp_160230.1 SmLINC02630-IBu 0.91 1.47e-06 6.75e-05
Smp_160230.1 SmLINC02657-IBu 0.91 1.74e-06 7.62e-05
Smp_160230.1 SmLINC03848-IBu 0.82 1.00e-04 1.90e-03
Smp_160230.1 SmLINC03849-IBu 0.87 2.43e-05 5.00e-04
Smp_160230.1 SmLINC03930-IBu 0.89 6.76e-06 2.00e-04
Smp_160230.1 SmLINC04366-IBu 0.84 7.73e-05 1.10e-03
Smp_160230.1 SmLINC04421-IBu -0.83 1.00e-04 1.50e-03
Smp_160230.1 SmLINC05284-IBu 0.89 8.36e-06 2.00e-04
Smp_160230.1 SmLINC05716-IBu 0.90 4.60e-06 1.00e-04
Smp_160230.1 SmLINC05720-IBu 0.87 1.59e-05 3.00e-04
Smp_160230.1 SmLINC06535-IBu 0.93 3.97e-07 2.68e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00311-IBu 0 -0.38 -1.64 -13.37 -13.37
SmLINC00367-IBu 0 -0.32 -2.33 -6.04 -11.31
SmLINC00957-IBu 0 -0.21 -1.59 -8.70 -10.64
SmLINC01341-IBu 0 -0.38 -2.69 -3.98 -4.09
SmLINC01833-IBu 0 -0.11 -1.11 -4.31 -6.80
SmLINC02042-IBu 0 -0.18 -2.36 -6.62 -7.23
SmLINC02209-IBu 0 -0.21 -1.09 -5.13 -5.51
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02323-IBu 0 -0.27 -1.62 -5.06 -6.31
SmLINC02355-IBu 0 -0.56 -2.14 -5.15 -7.24
SmLINC02453-IBu 0 -0.61 -1.64 -3.46 -5.39
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02737-IBu 0 -0.51 -1.91 -5.38 -6.61
SmLINC04063-IBu 0 -0.15 -1.46 -3.86 -5.16
SmLINC04149-IBu 0 -0.04 -2.24 -7.53 -8.23
SmLINC04214-IBu 0 -0.71 -1.81 -4.24 -4.23
SmLINC04450-IBu 0 -0.63 -2.31 -4.52 -5.41
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC04705-IBu 0 -0.44 -1.73 -4.94 -10.68
SmLINC05572-IBu 0 0.06 -1.32 -4.02 -9.37
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05850-IBu 0 -0.63 -1.38 -3.45 -5.11
SmLINC06106-IBu 0 0.00 -1.21 -3.43 -4.79
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06257-IBu 0 -0.36 -2.04 -6.75 -8.37
SmLINC06336-IBu 0 0.18 -1.19 -3.28 -4.48
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06563-IBu 0 -0.01 -1.84 -6.93 -6.95
SmLINC06610-IBu 0 -0.00 -1.33 -3.85 -4.79
SmLINC06852-IBu 0 -0.66 -1.67 -3.89 -4.94
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_009310.2 0 -1.22 -1.84 -5.37 -4.70
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_032580.2 0 2.38 3.91 5.63 6.44
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_038410.1 0 2.96 4.19 7.00 7.80
Smp_038560.4 0 -0.50 -2.81 -6.82 -6.68
Smp_051670.1 0 -0.76 -2.49 -6.26 -8.85
Smp_076890.1 0 -0.50 -0.05 -4.73 -3.71
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_111340.1 0 -0.73 -0.50 -5.92 -6.46
Smp_117990.1 0 -0.28 -2.23 -6.60 -7.02
Smp_122020.1 0 -0.55 -2.82 -5.25 -6.91
Smp_125070.2 0 2.21 3.59 5.06 5.92
Smp_126470.1 0 1.38 2.58 4.77 5.50
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_129290.1 0 -0.51 -1.30 -6.92 -4.90
Smp_136990.1 0 0.45 0.60 3.19 3.84
Smp_143670.1 0 1.96 2.97 4.69 5.17
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68
Smp_156460.1 0 0.33 1.81 3.22 4.15
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_167710.1 0 -1.15 -3.10 -9.21 -8.94
Smp_167900.1 0 2.31 3.06 5.33 6.34
Smp_179300.1 0 -0.63 -3.33 -6.15 -5.23
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_185440.1 0 -0.12 -1.84 -5.54 -6.28
Smp_195110.1 0 -0.78 -1.68 -8.24 -8.43
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202690.1 0 2.99 3.08 5.69 6.36
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_214020.1 0 1.35 2.40 4.26 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160230.1 SmLINC00311-IBu 0.91 1.88e-06 8.34e-05
Smp_160230.1 SmLINC00367-IBu 0.91 1.61e-06 7.47e-05
Smp_160230.1 SmLINC00957-IBu 0.94 6.60e-08 8.15e-06
Smp_160230.1 SmLINC01341-IBu 0.91 1.58e-06 7.39e-05
Smp_160230.1 SmLINC01833-IBu 0.90 4.21e-06 1.00e-04
Smp_160230.1 SmLINC02042-IBu 0.90 4.45e-06 1.00e-04
Smp_160230.1 SmLINC02209-IBu 0.90 3.72e-06 1.00e-04
Smp_160230.1 SmLINC02255-IBu 0.94 6.47e-08 8.04e-06
Smp_160230.1 SmLINC02323-IBu 0.92 7.02e-07 4.16e-05
Smp_160230.1 SmLINC02355-IBu 0.91 1.51e-06 7.15e-05
Smp_160230.1 SmLINC02453-IBu 0.94 1.59e-07 1.49e-05
Smp_160230.1 SmLINC02455-IBu 0.90 2.62e-06 1.00e-04
Smp_160230.1 SmLINC02630-IBu 0.91 1.47e-06 7.00e-05
Smp_160230.1 SmLINC02657-IBu 0.91 1.74e-06 7.89e-05
Smp_160230.1 SmLINC02737-IBu 0.94 1.16e-07 1.20e-05
Smp_160230.1 SmLINC04063-IBu 0.92 9.51e-07 5.15e-05
Smp_160230.1 SmLINC04149-IBu 0.90 4.51e-06 1.00e-04
Smp_160230.1 SmLINC04214-IBu 0.95 5.75e-08 7.42e-06
Smp_160230.1 SmLINC04450-IBu 0.92 5.97e-07 3.72e-05
Smp_160230.1 SmLINC04598-IBu 0.91 1.54e-06 7.26e-05
Smp_160230.1 SmLINC04606-IBu 0.92 8.06e-07 4.58e-05
Smp_160230.1 SmLINC04705-IBu 0.92 5.84e-07 3.66e-05
Smp_160230.1 SmLINC05572-IBu 0.91 2.02e-06 8.78e-05
Smp_160230.1 SmLINC05716-IBu 0.90 4.60e-06 1.00e-04
Smp_160230.1 SmLINC05850-IBu 0.95 4.95e-08 6.71e-06
Smp_160230.1 SmLINC06106-IBu 0.90 3.93e-06 1.00e-04
Smp_160230.1 SmLINC06111-IBu 0.91 1.47e-06 7.02e-05
Smp_160230.1 SmLINC06257-IBu 0.95 1.53e-08 3.04e-06
Smp_160230.1 SmLINC06336-IBu 0.90 3.73e-06 1.00e-04
Smp_160230.1 SmLINC06367-IBu 0.90 2.80e-06 1.00e-04
Smp_160230.1 SmLINC06441-IBu 0.90 2.62e-06 1.00e-04
Smp_160230.1 SmLINC06535-IBu 0.93 3.97e-07 2.80e-05
Smp_160230.1 SmLINC06563-IBu 0.91 1.38e-06 6.70e-05
Smp_160230.1 SmLINC06610-IBu 0.91 1.36e-06 6.64e-05
Smp_160230.1 SmLINC06852-IBu 0.96 1.25e-08 2.65e-06
Smp_000380.1 Smp_160230.1 0.91 2.05e-06 8.85e-05
Smp_160230.1 Smp_006960.1 0.92 5.78e-07 3.63e-05
Smp_009310.2 Smp_160230.1 0.90 4.22e-06 1.00e-04
Smp_021060.1 Smp_160230.1 0.90 4.81e-06 1.00e-04
Smp_160230.1 Smp_032580.2 -0.90 4.77e-06 1.00e-04
Smp_036270.4 Smp_160230.1 0.90 3.38e-06 1.00e-04
Smp_038410.1 Smp_160230.1 -0.90 3.16e-06 1.00e-04
Smp_038560.4 Smp_160230.1 0.97 6.08e-10 3.70e-07
Smp_051670.1 Smp_160230.1 0.90 3.28e-06 1.00e-04
Smp_160230.1 Smp_076890.1 0.91 1.70e-06 7.77e-05
Smp_077690.1 Smp_160230.1 0.91 2.18e-06 9.24e-05
Smp_081790.1 Smp_160230.1 -0.90 4.67e-06 1.00e-04
Smp_108390.1 Smp_160230.1 0.92 6.49e-07 3.94e-05
Smp_111340.1 Smp_160230.1 0.96 1.04e-08 2.35e-06
Smp_117990.1 Smp_160230.1 0.95 5.67e-08 7.35e-06
Smp_160230.1 Smp_122020.1 0.93 4.40e-07 3.00e-05
Smp_125070.2 Smp_160230.1 -0.91 1.71e-06 7.79e-05
Smp_160230.1 Smp_126470.1 -0.91 1.33e-06 6.53e-05
Smp_128900.1 Smp_160230.1 0.95 2.58e-08 4.31e-06
Smp_129290.1 Smp_160230.1 0.90 3.17e-06 1.00e-04
Smp_136990.1 Smp_160230.1 -0.91 1.40e-06 6.76e-05
Smp_160230.1 Smp_143670.1 -0.91 2.19e-06 9.27e-05
Smp_143870.1 Smp_160230.1 0.90 2.88e-06 1.00e-04
Smp_156460.1 Smp_160230.1 -0.91 1.38e-06 6.70e-05
Smp_160230.1 Smp_159900.1 0.91 2.49e-06 1.00e-04
Smp_167710.1 Smp_160230.1 0.90 3.66e-06 1.00e-04
Smp_167900.1 Smp_160230.1 -0.90 4.09e-06 1.00e-04
Smp_179300.1 Smp_160230.1 0.92 8.53e-07 4.77e-05
Smp_185080.1 Smp_160230.1 0.93 1.99e-07 1.73e-05
Smp_185370.1 Smp_160230.1 0.94 7.11e-08 8.57e-06
Smp_185440.1 Smp_160230.1 0.92 7.08e-07 4.19e-05
Smp_195110.1 Smp_160230.1 0.93 2.02e-07 1.75e-05
Smp_195150.1 Smp_160230.1 0.94 1.14e-07 1.18e-05
Smp_199850.1 Smp_160230.1 0.95 5.73e-08 7.41e-06
Smp_201900.1 Smp_160230.1 0.90 2.59e-06 1.00e-04
Smp_202690.1 Smp_160230.1 -0.91 1.43e-06 6.87e-05
Smp_203840.1 Smp_160230.1 0.90 3.29e-06 1.00e-04
Smp_214020.1 Smp_160230.1 -0.90 3.58e-06 1.00e-04