Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160160.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_160160.1 0 0.13 1.86 2.31 4.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160160.1 SmLINC00001-IBu 0.92 5.94e-07 3.55e-05
Smp_160160.1 SmLINC00004-IBu 0.88 9.09e-06 2.00e-04
Smp_160160.1 SmLINC00007-IBu 0.85 4.29e-05 7.00e-04
Smp_160160.1 SmLINC01520-IBu 0.90 3.01e-06 1.00e-04
Smp_160160.1 SmLINC02029-IBu 0.89 5.53e-06 1.00e-04
Smp_160160.1 SmLINC02255-IBu -0.81 2.00e-04 2.50e-03
Smp_160160.1 SmLINC02376-IBu 0.88 1.33e-05 3.00e-04
Smp_160160.1 SmLINC02394-IBu 0.85 5.78e-05 9.00e-04
Smp_160160.1 SmLINC02539-IBu 0.90 3.38e-06 1.00e-04
Smp_160160.1 SmLINC02540-IBu 0.87 2.23e-05 4.00e-04
Smp_160160.1 SmLINC02577-IBu 0.92 8.65e-07 4.63e-05
Smp_160160.1 SmLINC02776-IBu 0.82 1.00e-04 1.90e-03
Smp_160160.1 SmLINC02783-IBu 0.93 2.02e-07 1.67e-05
Smp_160160.1 SmLINC02786-IBu 0.86 2.70e-05 5.00e-04
Smp_160160.1 SmLINC03326-IBu 0.90 3.10e-06 1.00e-04
Smp_160160.1 SmLINC03658-IBu 0.86 3.21e-05 6.00e-04
Smp_160160.1 SmLINC04235-IBu 0.94 1.94e-07 1.62e-05
Smp_160160.1 SmLINC04237-IBu 0.87 1.57e-05 3.00e-04
Smp_160160.1 SmLINC04627-IBu 0.93 3.15e-07 2.28e-05
Smp_160160.1 SmLINC05289-IBu 0.84 6.29e-05 1.00e-03
Smp_160160.1 SmLINC05404-IBu 0.86 2.65e-05 5.00e-04
Smp_160160.1 SmLINC05604-IBu 0.84 7.22e-05 1.10e-03
Smp_160160.1 SmLINC05684-IBu 0.94 1.91e-07 1.61e-05
Smp_160160.1 SmLINC06239-IBu 0.90 3.38e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_160160.1 0 0.13 1.86 2.31 4.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_160160.1 0.94 1.11e-07 1.16e-05
Smp_007950.1 Smp_160160.1 0.91 1.48e-06 7.05e-05
Smp_016490.2 Smp_160160.1 0.94 7.91e-08 9.22e-06
Smp_160160.1 Smp_028870.1 0.94 8.03e-08 9.32e-06
Smp_085180.1 Smp_160160.1 0.94 7.61e-08 8.98e-06
Smp_160160.1 Smp_102780.1 0.94 6.90e-08 8.40e-06
Smp_105450.1 Smp_160160.1 0.90 2.57e-06 1.00e-04
Smp_160160.1 Smp_105450.2 0.93 5.13e-07 3.34e-05
Smp_123880.1 Smp_160160.1 0.93 4.96e-07 3.27e-05
Smp_160160.1 Smp_130100.1 0.94 1.10e-07 1.15e-05
Smp_160160.1 Smp_131410.1 0.93 4.28e-07 2.95e-05
Smp_160160.1 Smp_131490.1 0.94 1.85e-07 1.65e-05
Smp_136730.1 Smp_160160.1 0.92 6.77e-07 4.05e-05
Smp_160160.1 Smp_137700.1 0.94 1.91e-07 1.69e-05
Smp_137720.1 Smp_160160.1 0.94 8.45e-08 9.65e-06
Smp_138360.1 Smp_160160.1 0.91 1.24e-06 6.21e-05
Smp_139160.1 Smp_160160.1 0.96 3.97e-09 1.24e-06
Smp_160160.1 Smp_139240.1 0.93 2.84e-07 2.22e-05
Smp_140720.1 Smp_160160.1 0.91 2.46e-06 1.00e-04
Smp_155570.1 Smp_160160.1 0.90 3.30e-06 1.00e-04
Smp_159650.1 Smp_160160.1 0.96 9.40e-09 2.19e-06
Smp_162320.1 Smp_160160.1 0.95 4.45e-08 6.24e-06
Smp_163700.1 Smp_160160.1 0.91 1.51e-06 7.15e-05
Smp_160160.1 Smp_164320.1 0.94 1.25e-07 1.26e-05
Smp_181070.1 Smp_160160.1 0.94 1.18e-07 1.21e-05
Smp_160160.1 Smp_187140.1 0.94 1.65e-07 1.52e-05
Smp_194380.1 Smp_160160.1 0.92 8.68e-07 4.83e-05
Smp_160160.1 Smp_194910.1 0.94 9.15e-08 1.01e-05
Smp_160160.1 Smp_202610.1 0.92 6.97e-07 4.14e-05
Smp_203030.1 Smp_160160.1 0.93 3.05e-07 2.33e-05
Smp_205580.1 Smp_160160.1 0.94 1.02e-07 1.09e-05