Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_160150.1 Data

Correlation between Smp_160150.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
Smp_160150.1 0 1.36 0.22 4.52 5.05

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160150.1 SmLINC00171-IBu 0.92 1.16e-06 4.06e-05

Correlation between Smp_160150.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_160150.1 0 1.36 0.22 4.52 5.05

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160150.1 SmLINC00001-IBu 0.83 1.00e-04 1.60e-03
Smp_160150.1 SmLINC00004-IBu 0.85 5.01e-05 8.00e-04
Smp_160150.1 SmLINC00171-IBu 0.92 1.16e-06 5.73e-05
Smp_160150.1 SmLINC00266-IBu 0.90 4.41e-06 1.00e-04
Smp_160150.1 SmLINC00369-IBu 0.93 2.43e-07 1.90e-05
Smp_160150.1 SmLINC00376-IBu 0.84 7.50e-05 1.10e-03
Smp_160150.1 SmLINC00477-IBu 0.82 1.00e-04 2.00e-03
Smp_160150.1 SmLINC00525-IBu 0.85 5.18e-05 8.00e-04
Smp_160150.1 SmLINC00548-IBu 0.88 1.33e-05 3.00e-04
Smp_160150.1 SmLINC00633-IBu 0.87 1.94e-05 4.00e-04
Smp_160150.1 SmLINC01066-IBu 0.87 1.83e-05 4.00e-04
Smp_160150.1 SmLINC01084-IBu 0.89 6.07e-06 1.00e-04
Smp_160150.1 SmLINC01122-IBu 0.82 1.00e-04 1.80e-03
Smp_160150.1 SmLINC01139-IBu 0.82 1.00e-04 2.10e-03
Smp_160150.1 SmLINC01231-IBu 0.80 3.00e-04 3.10e-03
Smp_160150.1 SmLINC01431-IBu 0.95 2.47e-08 3.94e-06
Smp_160150.1 SmLINC01433-IBu 0.85 5.03e-05 8.00e-04
Smp_160150.1 SmLINC01435-IBu 0.84 8.32e-05 1.20e-03
Smp_160150.1 SmLINC01538-IBu 0.85 4.17e-05 7.00e-04
Smp_160150.1 SmLINC01569-IBu 0.81 2.00e-04 2.30e-03
Smp_160150.1 SmLINC01733-IBu 0.83 1.00e-04 1.40e-03
Smp_160150.1 SmLINC01746-IBu 0.89 6.63e-06 1.00e-04
Smp_160150.1 SmLINC02084-IBu 0.97 3.62e-10 2.45e-07
Smp_160150.1 SmLINC02394-IBu 0.84 7.11e-05 1.10e-03
Smp_160150.1 SmLINC02540-IBu 0.80 2.00e-04 3.10e-03
Smp_160150.1 SmLINC02546-IBu 0.95 3.48e-08 4.98e-06
Smp_160150.1 SmLINC03108-IBu 0.94 8.11e-08 8.88e-06
Smp_160150.1 SmLINC03309-IBu 0.86 2.57e-05 5.00e-04
Smp_160150.1 SmLINC03326-IBu 0.80 3.00e-04 3.30e-03
Smp_160150.1 SmLINC03693-IBu 0.87 1.74e-05 3.00e-04
Smp_160150.1 SmLINC03927-IBu 0.87 1.65e-05 3.00e-04
Smp_160150.1 SmLINC04421-IBu 0.86 3.57e-05 6.00e-04
Smp_160150.1 SmLINC04432-IBu 0.80 3.00e-04 3.30e-03
Smp_160150.1 SmLINC04475-IBu 0.81 2.00e-04 2.50e-03
Smp_160150.1 SmLINC04521-IBu 0.83 1.00e-04 1.60e-03
Smp_160150.1 SmLINC04684-IBu 0.93 3.55e-07 2.47e-05
Smp_160150.1 SmLINC05147-IBu 0.90 4.33e-06 1.00e-04
Smp_160150.1 SmLINC05258-IBu 0.94 8.40e-08 9.10e-06
Smp_160150.1 SmLINC05274-IBu -0.81 2.00e-04 2.50e-03
Smp_160150.1 SmLINC05289-IBu 0.81 2.00e-04 2.50e-03
Smp_160150.1 SmLINC05604-IBu 0.82 1.00e-04 2.00e-03
Smp_160150.1 SmLINC06024-IBu 0.83 1.00e-04 1.60e-03
Smp_160150.1 SmLINC06145-IBu 0.82 1.00e-04 2.00e-03
Smp_160150.1 SmLINC06221-IBu 0.87 2.37e-05 4.00e-04
Smp_160150.1 SmLINC06418-IBu 0.88 1.18e-05 3.00e-04
Smp_160150.1 SmLINC06449-IBu 0.80 2.00e-04 3.00e-03
Smp_160150.1 SmLINC06536-IBu 0.84 7.04e-05 1.00e-03
Smp_160150.1 SmLINC06543-IBu 0.88 9.20e-06 2.00e-04

Correlation between Smp_160150.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_160150.1 0 1.36 0.22 4.52 5.05
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_160150.1 0.90 4.75e-06 1.00e-04
Smp_038870.2 Smp_160150.1 0.91 2.40e-06 9.91e-05
Smp_160150.1 Smp_056460.1 0.92 8.60e-07 4.80e-05
Smp_058660.1 Smp_160150.1 0.94 7.71e-08 9.06e-06
Smp_160150.1 Smp_079420.1 0.90 4.25e-06 1.00e-04
Smp_160150.1 Smp_095410.1 0.92 5.59e-07 3.55e-05
Smp_137320.1 Smp_160150.1 0.93 1.98e-07 1.73e-05
Smp_160150.1 Smp_145400.1 0.93 3.85e-07 2.74e-05
Smp_160150.1 Smp_151120.1 0.90 3.46e-06 1.00e-04
Smp_159070.2 Smp_160150.1 0.90 4.12e-06 1.00e-04
Smp_172480.1 Smp_160150.1 0.90 4.52e-06 1.00e-04
Smp_160150.1 Smp_172960.1 0.93 4.78e-07 3.18e-05
Smp_160150.1 Smp_192780.1 0.90 2.97e-06 1.00e-04
Smp_194860.1 Smp_160150.1 0.93 4.39e-07 3.00e-05
Smp_160150.1 Smp_205270.1 0.90 3.77e-06 1.00e-04