Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160090.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01242-IBu 0 8.59 8.04 9.02 10.28
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_160090.2 0 9.28 9.75 11.69 12.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160090.2 SmLINC00369-IBu 0.83 9.63e-05 1.30e-03
Smp_160090.2 SmLINC00376-IBu 0.89 8.17e-06 2.00e-04
Smp_160090.2 SmLINC00548-IBu 0.82 1.00e-04 1.80e-03
Smp_160090.2 SmLINC01084-IBu 0.85 5.87e-05 9.00e-04
Smp_160090.2 SmLINC01122-IBu 0.82 1.00e-04 2.00e-03
Smp_160090.2 SmLINC01171-IBu 0.82 1.00e-04 1.70e-03
Smp_160090.2 SmLINC01242-IBu 0.84 6.65e-05 1.00e-03
Smp_160090.2 SmLINC01431-IBu 0.87 2.00e-05 4.00e-04
Smp_160090.2 SmLINC01538-IBu 0.80 3.00e-04 3.30e-03
Smp_160090.2 SmLINC01569-IBu 0.81 2.00e-04 2.70e-03
Smp_160090.2 SmLINC01733-IBu 0.82 1.00e-04 1.70e-03
Smp_160090.2 SmLINC02084-IBu 0.86 2.54e-05 5.00e-04
Smp_160090.2 SmLINC02255-IBu -0.80 2.00e-04 2.90e-03
Smp_160090.2 SmLINC02546-IBu 0.86 3.64e-05 6.00e-04
Smp_160090.2 SmLINC02630-IBu -0.86 3.87e-05 7.00e-04
Smp_160090.2 SmLINC03236-IBu 0.84 7.24e-05 1.10e-03
Smp_160090.2 SmLINC03693-IBu 0.81 2.00e-04 2.60e-03
Smp_160090.2 SmLINC03927-IBu 0.84 7.51e-05 1.10e-03
Smp_160090.2 SmLINC04432-IBu 0.84 6.42e-05 1.00e-03
Smp_160090.2 SmLINC04684-IBu 0.83 9.16e-05 1.30e-03
Smp_160090.2 SmLINC05258-IBu 0.82 1.00e-04 1.80e-03
Smp_160090.2 SmLINC06221-IBu 0.80 3.00e-04 3.20e-03
Smp_160090.2 SmLINC06535-IBu -0.80 3.00e-04 3.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01155-IBu 0 0.17 0.53 3.76 4.22
SmLINC02929-IBu 0 1.28 1.36 4.28 4.99
SmLINC04018-IBu 0 1.12 0.70 4.37 4.21
Smp_014260.1 0 2.10 2.61 4.63 5.12
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_038410.1 0 2.96 4.19 7.00 7.80
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_074260.1 0 0.68 1.93 4.41 5.05
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_120180.1 0 4.83 5.12 7.05 7.67
Smp_126470.1 0 1.38 2.58 4.77 5.50
Smp_142520.1 0 0.41 2.11 4.44 4.93
Smp_142670.1 0 -2.17 0.03 2.46 2.66
Smp_143670.1 0 1.96 2.97 4.69 5.17
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_162240.1 0 1.04 1.25 3.53 4.31
Smp_180920.1 0 2.38 4.29 4.89 5.30
Smp_194360.1 0 -0.29 1.14 4.33 4.96
Smp_201190.1 0 1.47 3.24 5.48 5.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160090.2 SmLINC01155-IBu 0.90 4.19e-06 1.00e-04
Smp_160090.2 SmLINC02929-IBu 0.92 8.07e-07 4.58e-05
Smp_160090.2 SmLINC04018-IBu 0.90 3.13e-06 1.00e-04
Smp_160090.2 Smp_014260.1 0.96 9.61e-09 2.22e-06
Smp_020760.2 Smp_160090.2 0.93 3.55e-07 2.59e-05
Smp_160090.2 Smp_038410.1 0.91 2.04e-06 8.83e-05
Smp_160090.2 Smp_055340.2 0.93 3.43e-07 2.53e-05
Smp_160090.2 Smp_074260.1 0.91 2.17e-06 9.21e-05
Smp_083990.2 Smp_160090.2 0.91 2.02e-06 8.77e-05
Smp_160090.2 Smp_120180.1 0.91 1.30e-06 6.44e-05
Smp_160090.2 Smp_126470.1 0.92 8.55e-07 4.78e-05
Smp_160090.2 Smp_142520.1 0.90 4.56e-06 1.00e-04
Smp_160090.2 Smp_142670.1 0.90 4.58e-06 1.00e-04
Smp_160090.2 Smp_143670.1 0.90 3.54e-06 1.00e-04
Smp_160090.2 Smp_162240.1 0.91 1.97e-06 8.62e-05
Smp_160090.2 Smp_180920.1 0.91 1.83e-06 8.17e-05
Smp_160090.2 Smp_194360.1 0.90 3.17e-06 1.00e-04
Smp_201190.1 Smp_160090.2 0.91 2.00e-06 8.70e-05