Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_160000.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_160000.2 0 6.42 8.33 8.49 8.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_160000.2 SmLINC02630-IBu -0.80 3.00e-04 3.20e-03
Smp_160000.2 SmLINC03769-IBu -0.80 3.00e-04 3.30e-03
Smp_160000.2 SmLINC03848-IBu -0.80 2.00e-04 3.00e-03
Smp_160000.2 SmLINC03930-IBu -0.81 2.00e-04 2.60e-03
Smp_160000.2 SmLINC05632-IBu 0.89 7.93e-06 2.00e-04
Smp_160000.2 SmLINC05870-IBu 0.82 1.00e-04 2.10e-03
Smp_160000.2 SmLINC05989-IBu -0.81 1.00e-04 2.20e-03
Smp_160000.2 SmLINC05990-IBu 0.84 8.19e-05 1.20e-03
Smp_160000.2 SmLINC06128-IBu -0.89 6.48e-06 1.00e-04
Smp_160000.2 SmLINC06903-IBu -0.80 2.00e-04 2.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 Smp_160000.2 -0.90 3.32e-06 1.00e-04
Smp_040720.3 Smp_160000.2 0.91 1.34e-06 6.56e-05
Smp_160000.2 Smp_051230.4 -0.90 3.47e-06 1.00e-04
Smp_168080.2 Smp_160000.2 -0.92 6.74e-07 4.04e-05
Smp_176430.2 Smp_160000.2 0.91 2.34e-06 9.74e-05
Smp_160000.2 Smp_195070.1 -0.92 9.32e-07 5.07e-05