Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

  1. Home
  2. Smp_159900.1

Smp_159900.1 Data

Correlation between Smp_159900.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159900.1 SmLINC04271-IBu 0.65 8.20e-03 3.01e-02

Correlation between Smp_159900.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159900.1 SmLINC00282-IBu 0.85 4.58e-05 8.00e-04
Smp_159900.1 SmLINC01637-IBu 0.80 2.00e-04 2.70e-03
Smp_159900.1 SmLINC02255-IBu 0.96 1.09e-08 2.26e-06
Smp_159900.1 SmLINC02630-IBu 0.95 5.50e-08 6.81e-06
Smp_159900.1 SmLINC02657-IBu 0.92 6.40e-07 3.74e-05
Smp_159900.1 SmLINC03769-IBu 0.82 1.00e-04 2.10e-03
Smp_159900.1 SmLINC03848-IBu 0.84 8.60e-05 1.20e-03
Smp_159900.1 SmLINC03930-IBu 0.85 4.35e-05 7.00e-04
Smp_159900.1 SmLINC05284-IBu 0.90 4.12e-06 1.00e-04
Smp_159900.1 SmLINC05720-IBu 0.82 1.00e-04 1.70e-03
Smp_159900.1 SmLINC05989-IBu 0.88 1.14e-05 2.00e-04
Smp_159900.1 SmLINC06128-IBu 0.91 1.59e-06 7.16e-05
Smp_159900.1 SmLINC06535-IBu 0.93 2.02e-07 1.67e-05
Smp_159900.1 SmLINC06903-IBu 0.80 2.00e-04 3.00e-03

Correlation between Smp_159900.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 Smp_159900.1 0.93 2.55e-07 2.06e-05
Smp_036270.4 Smp_159900.1 0.93 4.46e-07 3.03e-05
Smp_051230.4 Smp_159900.1 0.91 1.21e-06 6.12e-05
Smp_055340.2 Smp_159900.1 -0.91 1.71e-06 7.81e-05
Smp_077690.1 Smp_159900.1 0.91 1.54e-06 7.23e-05
Smp_109240.1 Smp_159900.1 0.91 1.64e-06 7.57e-05
Smp_145810.2 Smp_159900.1 0.91 2.42e-06 9.97e-05
Smp_149670.1 Smp_159900.1 0.94 1.86e-07 1.65e-05
Smp_157140.1 Smp_159900.1 -0.91 2.45e-06 1.00e-04
Smp_160230.1 Smp_159900.1 0.91 2.49e-06 1.00e-04
Smp_168080.2 Smp_159900.1 0.93 1.99e-07 1.74e-05
Smp_188900.1 Smp_159900.1 0.95 4.98e-08 6.74e-06
Smp_195070.1 Smp_159900.1 0.95 4.71e-08 6.49e-06