Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_159730.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_159730.2 0 -0.26 -0.69 -4.33 -4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159730.2 SmLINC00001-IBu -0.88 1.29e-05 3.00e-04
Smp_159730.2 SmLINC00004-IBu -0.90 3.23e-06 1.00e-04
Smp_159730.2 SmLINC00026-IBu 0.81 2.00e-04 2.40e-03
Smp_159730.2 SmLINC00037-IBu 0.83 1.00e-04 1.40e-03
Smp_159730.2 SmLINC00133-IBu 0.80 3.00e-04 3.20e-03
Smp_159730.2 SmLINC00282-IBu 0.82 1.00e-04 2.10e-03
Smp_159730.2 SmLINC00294-IBu 0.93 3.05e-07 2.23e-05
Smp_159730.2 SmLINC00369-IBu -0.89 5.45e-06 1.00e-04
Smp_159730.2 SmLINC00376-IBu -0.83 1.00e-04 1.50e-03
Smp_159730.2 SmLINC00525-IBu -0.90 2.89e-06 1.00e-04
Smp_159730.2 SmLINC00548-IBu -0.82 1.00e-04 2.10e-03
Smp_159730.2 SmLINC00633-IBu -0.83 1.00e-04 1.60e-03
Smp_159730.2 SmLINC01084-IBu -0.92 6.26e-07 3.68e-05
Smp_159730.2 SmLINC01122-IBu -0.86 3.70e-05 6.00e-04
Smp_159730.2 SmLINC01431-IBu -0.92 9.36e-07 4.89e-05
Smp_159730.2 SmLINC01462-IBu 0.83 8.94e-05 1.30e-03
Smp_159730.2 SmLINC01486-IBu 0.82 1.00e-04 2.00e-03
Smp_159730.2 SmLINC01538-IBu -0.82 1.00e-04 1.80e-03
Smp_159730.2 SmLINC01569-IBu -0.85 5.72e-05 9.00e-04
Smp_159730.2 SmLINC01637-IBu 0.87 1.73e-05 3.00e-04
Smp_159730.2 SmLINC01733-IBu -0.84 8.35e-05 1.20e-03
Smp_159730.2 SmLINC01746-IBu -0.81 2.00e-04 2.70e-03
Smp_159730.2 SmLINC02084-IBu -0.89 5.77e-06 1.00e-04
Smp_159730.2 SmLINC02255-IBu 0.85 5.01e-05 8.00e-04
Smp_159730.2 SmLINC02394-IBu -0.86 2.49e-05 5.00e-04
Smp_159730.2 SmLINC02539-IBu -0.83 1.00e-04 1.50e-03
Smp_159730.2 SmLINC02545-IBu -0.81 2.00e-04 2.50e-03
Smp_159730.2 SmLINC02546-IBu -0.86 2.87e-05 5.00e-04
Smp_159730.2 SmLINC02630-IBu 0.81 2.00e-04 2.60e-03
Smp_159730.2 SmLINC02657-IBu 0.80 2.00e-04 3.00e-03
Smp_159730.2 SmLINC03108-IBu -0.80 2.00e-04 2.90e-03
Smp_159730.2 SmLINC03309-IBu -0.80 3.00e-04 3.40e-03
Smp_159730.2 SmLINC03395-IBu 0.81 1.00e-04 2.20e-03
Smp_159730.2 SmLINC03849-IBu 0.90 3.84e-06 1.00e-04
Smp_159730.2 SmLINC03927-IBu -0.85 5.01e-05 8.00e-04
Smp_159730.2 SmLINC04271-IBu 0.83 1.00e-04 1.40e-03
Smp_159730.2 SmLINC04421-IBu -0.91 1.94e-06 8.24e-05
Smp_159730.2 SmLINC04423-IBu -0.84 6.71e-05 1.00e-03
Smp_159730.2 SmLINC04478-IBu -0.85 5.39e-05 9.00e-04
Smp_159730.2 SmLINC04521-IBu -0.86 2.97e-05 5.00e-04
Smp_159730.2 SmLINC04684-IBu -0.81 1.00e-04 2.30e-03
Smp_159730.2 SmLINC05147-IBu -0.85 4.31e-05 7.00e-04
Smp_159730.2 SmLINC05284-IBu 0.85 5.05e-05 8.00e-04
Smp_159730.2 SmLINC05289-IBu -0.87 1.54e-05 3.00e-04
Smp_159730.2 SmLINC05604-IBu -0.88 1.02e-05 2.00e-04
Smp_159730.2 SmLINC05716-IBu 0.84 8.56e-05 1.20e-03
Smp_159730.2 SmLINC05720-IBu 0.82 1.00e-04 2.10e-03
Smp_159730.2 SmLINC06024-IBu -0.93 4.24e-07 2.80e-05
Smp_159730.2 SmLINC06145-IBu -0.80 2.00e-04 2.80e-03
Smp_159730.2 SmLINC06490-IBu 0.87 1.59e-05 3.00e-04
Smp_159730.2 SmLINC06535-IBu 0.86 2.62e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159730.2 0 -0.26 -0.69 -4.33 -4.68
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_183870.1 0 -0.34 -1.88 -9.35 -11.39
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 Smp_159730.2 -0.91 1.81e-06 8.11e-05
Smp_033260.1 Smp_159730.2 -0.94 1.45e-07 1.39e-05
Smp_038870.2 Smp_159730.2 -0.93 1.96e-07 1.72e-05
Smp_159730.2 Smp_040970.2 -0.91 1.40e-06 6.76e-05
Smp_050350.3 Smp_159730.2 -0.93 2.97e-07 2.29e-05
Smp_159730.2 Smp_052280.2 -0.94 8.15e-08 9.41e-06
Smp_159730.2 Smp_056460.1 -0.93 2.92e-07 2.26e-05
Smp_159730.2 Smp_079420.1 -0.93 1.94e-07 1.71e-05
Smp_159730.2 Smp_086600.1 0.96 1.04e-08 2.34e-06
Smp_159730.2 Smp_094050.1 -0.92 6.72e-07 4.03e-05
Smp_159730.2 Smp_095410.1 -0.90 3.87e-06 1.00e-04
Smp_159730.2 Smp_137000.2 -0.92 5.38e-07 3.45e-05
Smp_159730.2 Smp_156930.1 -0.91 2.34e-06 9.71e-05
Smp_159730.2 Smp_172960.1 -0.91 2.41e-06 9.93e-05
Smp_159730.2 Smp_183870.1 0.92 1.11e-06 5.75e-05
Smp_159730.2 Smp_192780.1 -0.91 1.62e-06 7.50e-05
Smp_194860.1 Smp_159730.2 -0.92 5.24e-07 3.39e-05
Smp_203090.1 Smp_159730.2 -0.90 4.08e-06 1.00e-04
Smp_212510.1 Smp_159730.2 0.92 1.02e-06 5.42e-05