Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_159130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159130.1 SmLINC00133-IBu 0.80 2.00e-04 3.00e-03
Smp_159130.1 SmLINC00784-IBu 0.81 2.00e-04 2.60e-03
Smp_159130.1 SmLINC03930-IBu 0.85 5.26e-05 8.00e-04
Smp_159130.1 SmLINC05716-IBu 0.80 2.00e-04 2.80e-03
Smp_159130.1 SmLINC05720-IBu 0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 Smp_159130.1 0.94 1.84e-07 1.64e-05
Smp_083340.4 Smp_159130.1 0.95 5.93e-08 7.58e-06
Smp_159130.1 Smp_140680.2 0.91 1.37e-06 6.69e-05
Smp_201750.1 Smp_159130.1 0.95 1.81e-08 3.39e-06
Smp_202140.1 Smp_159130.1 0.90 3.23e-06 1.00e-04