Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_159070.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_159070.4 0 3.29 5.54 2.90 0.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159070.4 SmLINC00372-IBu 0.97 5.39e-10 3.16e-07
Smp_159070.4 SmLINC01316-IBu 0.86 3.58e-05 6.00e-04
Smp_159070.4 SmLINC04430-IBu 0.92 6.61e-07 3.83e-05
Smp_159070.4 SmLINC04947-IBu 0.84 7.09e-05 1.10e-03
Smp_159070.4 SmLINC05559-IBu 0.94 1.38e-07 1.28e-05
Smp_159070.4 SmLINC06700-IBu 0.93 1.94e-07 1.62e-05
Smp_159070.4 SmLINC06836-IBu 0.97 8.08e-10 4.11e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_159070.4 0.90 2.98e-06 1.00e-04
Smp_017650.1 Smp_159070.4 0.91 1.29e-06 6.39e-05
Smp_021340.3 Smp_159070.4 0.93 3.38e-07 2.50e-05
Smp_159070.4 Smp_032120.1 0.96 2.33e-09 8.80e-07
Smp_034840.1 Smp_159070.4 0.93 3.39e-07 2.51e-05
Smp_036270.3 Smp_159070.4 0.92 6.60e-07 3.98e-05
Smp_062070.1 Smp_159070.4 0.95 1.63e-08 3.17e-06
Smp_063650.3 Smp_159070.4 0.92 9.69e-07 5.22e-05
Smp_083380.2 Smp_159070.4 0.90 4.32e-06 1.00e-04
Smp_084940.2 Smp_159070.4 0.96 4.04e-09 1.25e-06
Smp_098370.1 Smp_159070.4 0.95 2.87e-08 4.64e-06
Smp_099160.4 Smp_159070.4 0.92 7.66e-07 4.42e-05
Smp_103540.1 Smp_159070.4 0.96 9.97e-09 2.27e-06
Smp_138080.1 Smp_159070.4 0.90 4.57e-06 1.00e-04
Smp_159070.3 Smp_159070.4 0.95 3.29e-08 5.08e-06
Smp_159150.1 Smp_159070.4 0.97 9.79e-10 5.02e-07