Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_158950.1 Data

Correlation between Smp_158950.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_158950.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_158950.1 0 1.05 2.68 3.37 4.78

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_158950.1 SmLINC00001-IBu 0.81 2.00e-04 2.60e-03
Smp_158950.1 SmLINC00004-IBu 0.85 5.07e-05 8.00e-04
Smp_158950.1 SmLINC01520-IBu 0.81 2.00e-04 2.40e-03
Smp_158950.1 SmLINC02029-IBu 0.82 1.00e-04 1.80e-03
Smp_158950.1 SmLINC02255-IBu -0.86 2.65e-05 5.00e-04
Smp_158950.1 SmLINC02539-IBu 0.81 2.00e-04 2.40e-03
Smp_158950.1 SmLINC02545-IBu 0.87 2.16e-05 4.00e-04
Smp_158950.1 SmLINC02577-IBu 0.81 2.00e-04 2.60e-03
Smp_158950.1 SmLINC02630-IBu -0.81 2.00e-04 2.70e-03
Smp_158950.1 SmLINC02657-IBu -0.86 3.11e-05 6.00e-04
Smp_158950.1 SmLINC03927-IBu 0.81 2.00e-04 2.30e-03
Smp_158950.1 SmLINC04235-IBu 0.84 6.91e-05 1.00e-03
Smp_158950.1 SmLINC04421-IBu 0.83 1.00e-04 1.50e-03
Smp_158950.1 SmLINC04423-IBu 0.80 3.00e-04 3.30e-03
Smp_158950.1 SmLINC04896-IBu 0.84 6.87e-05 1.00e-03
Smp_158950.1 SmLINC05284-IBu -0.81 2.00e-04 2.60e-03
Smp_158950.1 SmLINC05404-IBu 0.86 3.51e-05 6.00e-04
Smp_158950.1 SmLINC05604-IBu 0.85 4.87e-05 8.00e-04
Smp_158950.1 SmLINC05684-IBu 0.81 2.00e-04 2.70e-03
Smp_158950.1 SmLINC06415-IBu 0.89 5.24e-06 1.00e-04
Smp_158950.1 SmLINC06535-IBu -0.83 9.32e-05 1.30e-03

Correlation between Smp_158950.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data