Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_158880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
Smp_158880.1 0 1.21 5.25 6.12 5.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_158880.1 SmLINC00554-IBu -0.82 1.00e-04 2.10e-03
Smp_158880.1 SmLINC04432-IBu 0.80 3.00e-04 3.30e-03
Smp_158880.1 SmLINC04475-IBu 0.86 3.35e-05 6.00e-04
Smp_158880.1 SmLINC05632-IBu 0.92 1.17e-06 5.76e-05
Smp_158880.1 SmLINC05870-IBu 0.93 3.52e-07 2.46e-05
Smp_158880.1 SmLINC06205-IBu 0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_158880.1 0 1.21 5.25 6.12 5.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 Smp_158880.1 0.90 4.24e-06 1.00e-04
Smp_129110.1 Smp_158880.1 0.94 1.24e-07 1.25e-05