Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_158680.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_158680.1 0 0.18 0.75 -3.19 -3.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_158680.1 SmLINC00372-IBu 0.93 2.67e-07 2.03e-05
Smp_158680.1 SmLINC01316-IBu 0.90 3.10e-06 1.00e-04
Smp_158680.1 SmLINC02026-IBu 0.80 2.00e-04 3.00e-03
Smp_158680.1 SmLINC04074-IBu 0.82 1.00e-04 1.70e-03
Smp_158680.1 SmLINC04430-IBu 0.81 2.00e-04 2.50e-03
Smp_158680.1 SmLINC04947-IBu 0.80 2.00e-04 2.90e-03
Smp_158680.1 SmLINC05559-IBu 0.86 3.34e-05 6.00e-04
Smp_158680.1 SmLINC06021-IBu 0.81 2.00e-04 2.60e-03
Smp_158680.1 SmLINC06024-IBu -0.80 2.00e-04 2.80e-03
Smp_158680.1 SmLINC06490-IBu 0.92 5.32e-07 3.28e-05
Smp_158680.1 SmLINC06646-IBu 0.80 2.00e-04 2.90e-03
Smp_158680.1 SmLINC06700-IBu 0.80 3.00e-04 3.30e-03
Smp_158680.1 SmLINC06836-IBu 0.88 9.80e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_158680.1 Smp_032120.1 0.92 1.11e-06 5.74e-05
Smp_036270.3 Smp_158680.1 0.90 2.76e-06 1.00e-04
Smp_059340.3 Smp_158680.1 0.90 2.87e-06 1.00e-04
Smp_090930.5 Smp_158680.1 0.95 2.00e-08 3.63e-06
Smp_159070.3 Smp_158680.1 0.94 6.51e-08 8.07e-06
Smp_168800.1 Smp_158680.1 0.94 1.63e-07 1.51e-05
Smp_194060.1 Smp_158680.1 0.91 2.02e-06 8.77e-05
Smp_200120.1 Smp_158680.1 0.94 1.81e-07 1.63e-05
Smp_205060.1 Smp_158680.1 0.90 3.07e-06 1.00e-04