Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_158620.1 Data

Correlation between Smp_158620.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_158620.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_158620.1 0 -0.19 -0.50 3.70 5.00

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_158620.1 SmLINC00001-IBu 0.97 6.13e-10 3.44e-07
Smp_158620.1 SmLINC00004-IBu 0.98 6.56e-11 8.16e-08
Smp_158620.1 SmLINC00007-IBu 0.86 3.09e-05 6.00e-04
Smp_158620.1 SmLINC00266-IBu 0.82 1.00e-04 1.70e-03
Smp_158620.1 SmLINC00294-IBu -0.82 1.00e-04 1.80e-03
Smp_158620.1 SmLINC00369-IBu 0.86 3.44e-05 6.00e-04
Smp_158620.1 SmLINC00376-IBu 0.83 1.00e-04 1.60e-03
Smp_158620.1 SmLINC00525-IBu 0.92 6.18e-07 3.65e-05
Smp_158620.1 SmLINC01084-IBu 0.92 5.23e-07 3.25e-05
Smp_158620.1 SmLINC01431-IBu 0.90 3.68e-06 1.00e-04
Smp_158620.1 SmLINC01432-IBu 0.87 2.46e-05 5.00e-04
Smp_158620.1 SmLINC01520-IBu 0.93 2.99e-07 2.19e-05
Smp_158620.1 SmLINC02029-IBu 0.91 1.46e-06 6.73e-05
Smp_158620.1 SmLINC02084-IBu 0.89 8.31e-06 2.00e-04
Smp_158620.1 SmLINC02255-IBu -0.83 1.00e-04 1.40e-03
Smp_158620.1 SmLINC02376-IBu 0.90 3.96e-06 1.00e-04
Smp_158620.1 SmLINC02394-IBu 0.92 8.30e-07 4.49e-05
Smp_158620.1 SmLINC02539-IBu 0.95 1.73e-08 3.09e-06
Smp_158620.1 SmLINC02540-IBu 0.91 2.48e-06 9.78e-05
Smp_158620.1 SmLINC02545-IBu 0.88 1.45e-05 3.00e-04
Smp_158620.1 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_158620.1 SmLINC02577-IBu 0.93 2.43e-07 1.90e-05
Smp_158620.1 SmLINC02630-IBu -0.82 1.00e-04 1.80e-03
Smp_158620.1 SmLINC02783-IBu 0.87 1.68e-05 3.00e-04
Smp_158620.1 SmLINC02786-IBu 0.81 2.00e-04 2.60e-03
Smp_158620.1 SmLINC03108-IBu 0.80 3.00e-04 3.30e-03
Smp_158620.1 SmLINC03326-IBu 0.90 3.22e-06 1.00e-04
Smp_158620.1 SmLINC03658-IBu 0.87 1.95e-05 4.00e-04
Smp_158620.1 SmLINC03849-IBu -0.84 8.04e-05 1.20e-03
Smp_158620.1 SmLINC03927-IBu 0.88 9.90e-06 2.00e-04
Smp_158620.1 SmLINC04235-IBu 0.93 4.64e-07 2.98e-05
Smp_158620.1 SmLINC04237-IBu 0.80 2.00e-04 2.80e-03
Smp_158620.1 SmLINC04421-IBu 0.97 3.48e-10 2.39e-07
Smp_158620.1 SmLINC04423-IBu 0.92 1.14e-06 5.64e-05
Smp_158620.1 SmLINC04478-IBu 0.82 1.00e-04 2.10e-03
Smp_158620.1 SmLINC04521-IBu 0.80 3.00e-04 3.40e-03
Smp_158620.1 SmLINC04627-IBu 0.84 8.62e-05 1.20e-03
Smp_158620.1 SmLINC04896-IBu 0.83 1.00e-04 1.60e-03
Smp_158620.1 SmLINC05274-IBu -0.82 1.00e-04 1.80e-03
Smp_158620.1 SmLINC05284-IBu -0.80 2.00e-04 2.90e-03
Smp_158620.1 SmLINC05289-IBu 0.96 1.22e-08 2.44e-06
Smp_158620.1 SmLINC05404-IBu 0.87 1.93e-05 4.00e-04
Smp_158620.1 SmLINC05604-IBu 0.99 1.48e-12 7.63e-09
Smp_158620.1 SmLINC05684-IBu 0.90 3.99e-06 1.00e-04
Smp_158620.1 SmLINC06024-IBu 0.93 3.27e-07 2.33e-05
Smp_158620.1 SmLINC06145-IBu 0.82 1.00e-04 1.90e-03
Smp_158620.1 SmLINC06239-IBu 0.83 9.03e-05 1.30e-03
Smp_158620.1 SmLINC06415-IBu 0.81 2.00e-04 2.70e-03
Smp_158620.1 SmLINC06490-IBu -0.84 8.12e-05 1.20e-03

Correlation between Smp_158620.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_158620.1 0 -0.19 -0.50 3.70 5.00
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_158620.1 0.91 2.30e-06 9.60e-05
Smp_158620.1 Smp_007950.1 0.92 7.88e-07 4.51e-05
Smp_158620.1 Smp_016490.2 0.96 1.40e-08 2.86e-06
Smp_158620.1 Smp_024180.1 0.90 4.24e-06 1.00e-04
Smp_158620.1 Smp_024180.2 0.93 3.16e-07 2.39e-05
Smp_158620.1 Smp_028870.1 0.95 1.81e-08 3.40e-06
Smp_033260.1 Smp_158620.1 0.96 4.26e-09 1.30e-06
Smp_158620.1 Smp_037720.1 0.95 2.60e-08 4.33e-06
Smp_038870.2 Smp_158620.1 0.91 1.29e-06 6.39e-05
Smp_050350.3 Smp_158620.1 0.97 4.34e-10 2.98e-07
Smp_158620.1 Smp_052280.2 0.93 1.94e-07 1.70e-05
Smp_158620.1 Smp_056460.1 0.96 9.89e-09 2.26e-06
Smp_158620.1 Smp_079420.1 0.92 7.75e-07 4.46e-05
Smp_083430.1 Smp_158620.1 0.94 7.56e-08 8.94e-06
Smp_158620.1 Smp_085180.1 0.93 2.60e-07 2.09e-05
Smp_158620.1 Smp_094050.1 0.93 3.56e-07 2.59e-05
Smp_158620.1 Smp_095410.1 0.92 1.12e-06 5.77e-05
Smp_158620.1 Smp_102780.1 0.96 1.41e-08 2.87e-06
Smp_158620.1 Smp_123880.1 0.93 2.14e-07 1.82e-05
Smp_158620.1 Smp_130100.1 0.95 3.43e-08 5.24e-06
Smp_158620.1 Smp_131410.1 0.94 1.09e-07 1.15e-05
Smp_158620.1 Smp_131490.1 0.93 1.99e-07 1.73e-05
Smp_158620.1 Smp_137000.2 0.91 1.27e-06 6.32e-05
Smp_158620.1 Smp_137720.1 0.90 3.08e-06 1.00e-04
Smp_158620.1 Smp_137810.1 0.97 2.56e-10 2.12e-07
Smp_158620.1 Smp_139240.1 0.92 1.05e-06 5.54e-05
Smp_158620.1 Smp_140720.1 0.98 8.81e-11 1.07e-07
Smp_158620.1 Smp_155570.1 0.98 3.81e-12 1.51e-08
Smp_158620.1 Smp_156930.1 0.93 2.56e-07 2.06e-05
Smp_158620.1 Smp_159650.1 0.93 2.24e-07 1.88e-05
Smp_158620.1 Smp_162320.1 0.92 6.45e-07 3.92e-05
Smp_158620.1 Smp_163700.1 0.92 1.14e-06 5.85e-05
Smp_158620.1 Smp_164320.1 0.94 8.80e-08 9.91e-06
Smp_181070.1 Smp_158620.1 0.91 2.42e-06 9.95e-05
Smp_158620.1 Smp_187140.1 0.93 4.79e-07 3.19e-05
Smp_158620.1 Smp_192780.1 0.96 3.20e-09 1.08e-06
Smp_194380.1 Smp_158620.1 0.92 6.67e-07 4.01e-05
Smp_194860.1 Smp_158620.1 0.92 9.68e-07 5.21e-05
Smp_158620.1 Smp_194910.1 0.92 1.17e-06 5.97e-05
Smp_158620.1 Smp_196830.1 0.95 3.22e-08 5.02e-06
Smp_158620.1 Smp_201910.1 0.90 3.05e-06 1.00e-04
Smp_158620.1 Smp_202610.1 0.97 5.25e-10 3.36e-07
Smp_158620.1 Smp_203030.1 0.97 1.30e-09 6.04e-07
Smp_158620.1 Smp_205580.1 0.91 1.45e-06 6.94e-05