Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_157850.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_157850.1 0 6.95 8.76 9.82 8.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157850.1 SmLINC00477-IBu 0.83 9.50e-05 1.30e-03
Smp_157850.1 SmLINC01066-IBu 0.85 4.13e-05 7.00e-04
Smp_157850.1 SmLINC01433-IBu 0.85 5.55e-05 9.00e-04
Smp_157850.1 SmLINC01822-IBu 0.87 2.33e-05 4.00e-04
Smp_157850.1 SmLINC02581-IBu 0.82 1.00e-04 1.70e-03
Smp_157850.1 SmLINC03542-IBu 0.80 3.00e-04 3.30e-03
Smp_157850.1 SmLINC03693-IBu 0.81 1.00e-04 2.20e-03
Smp_157850.1 SmLINC04054-IBu 0.84 7.25e-05 1.10e-03
Smp_157850.1 SmLINC04475-IBu 0.83 9.74e-05 1.30e-03
Smp_157850.1 SmLINC04769-IBu 0.88 1.03e-05 2.00e-04
Smp_157850.1 SmLINC05009-IBu 0.90 4.21e-06 1.00e-04
Smp_157850.1 SmLINC05171-IBu 0.86 2.82e-05 5.00e-04
Smp_157850.1 SmLINC05632-IBu 0.86 3.69e-05 6.00e-04
Smp_157850.1 SmLINC05870-IBu 0.81 1.00e-04 2.30e-03
Smp_157850.1 SmLINC06007-IBu 0.88 9.60e-06 2.00e-04
Smp_157850.1 SmLINC06221-IBu 0.85 4.77e-05 8.00e-04
Smp_157850.1 SmLINC06536-IBu 0.84 8.53e-05 1.20e-03
Smp_157850.1 SmLINC06538-IBu 0.84 6.55e-05 1.00e-03
Smp_157850.1 SmLINC06543-IBu 0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_157850.1 0 6.95 8.76 9.82 8.05
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_175020.1 0 5.88 8.81 11.73 9.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_163940.1 Smp_157850.1 0.91 2.44e-06 1.00e-04
Smp_157850.1 Smp_175020.1 0.90 4.24e-06 1.00e-04