Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_157840.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_157840.1 0 1.84 2.05 -4.37 -2.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157840.1 SmLINC04430-IBu 0.57 2.51e-02 6.77e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_157840.1 0 1.84 2.05 -4.37 -2.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157840.1 SmLINC01316-IBu 0.87 2.32e-05 4.00e-04
Smp_157840.1 SmLINC01979-IBu 0.87 1.57e-05 3.00e-04
Smp_157840.1 SmLINC02646-IBu 0.91 2.10e-06 8.71e-05
Smp_157840.1 SmLINC04074-IBu 0.81 2.00e-04 2.40e-03
Smp_157840.1 SmLINC06646-IBu 0.97 2.93e-10 2.14e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_157840.1 0 1.84 2.05 -4.37 -2.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157840.1 Smp_017650.1 0.96 1.31e-08 2.74e-06
Smp_157840.1 Smp_021340.3 0.92 6.14e-07 3.79e-05
Smp_157840.1 Smp_024140.1 0.93 2.36e-07 1.95e-05
Smp_157840.1 Smp_059340.3 0.95 3.57e-08 5.38e-06
Smp_059530.1 Smp_157840.1 0.91 2.37e-06 9.83e-05
Smp_062610.2 Smp_157840.1 0.92 7.80e-07 4.48e-05
Smp_157840.1 Smp_083380.2 0.94 1.07e-07 1.13e-05