Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_157390.1 Data

Correlation between Smp_157390.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_157390.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_157390.1 0 3.34 4.15 5.22 5.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157390.1 SmLINC02255-IBu -0.90 3.86e-06 1.00e-04
Smp_157390.1 SmLINC02630-IBu -0.84 8.22e-05 1.20e-03
Smp_157390.1 SmLINC02657-IBu -0.92 1.05e-06 5.34e-05
Smp_157390.1 SmLINC03769-IBu -0.82 1.00e-04 1.70e-03
Smp_157390.1 SmLINC03848-IBu -0.81 2.00e-04 2.70e-03
Smp_157390.1 SmLINC03930-IBu -0.81 1.00e-04 2.10e-03
Smp_157390.1 SmLINC04250-IBu 0.83 1.00e-04 1.60e-03
Smp_157390.1 SmLINC05284-IBu -0.80 3.00e-04 3.10e-03
Smp_157390.1 SmLINC05632-IBu 0.85 5.51e-05 9.00e-04
Smp_157390.1 SmLINC05989-IBu -0.85 5.11e-05 8.00e-04
Smp_157390.1 SmLINC05990-IBu 0.91 2.27e-06 9.20e-05
Smp_157390.1 SmLINC06128-IBu -0.87 1.66e-05 3.00e-04
Smp_157390.1 SmLINC06535-IBu -0.85 5.32e-05 8.00e-04

Correlation between Smp_157390.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_172510.2 0 9.12 10.77 11.45 12.33
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157390.1 Smp_157140.1 0.92 8.44e-07 4.73e-05
Smp_157390.1 Smp_168080.2 -0.90 2.54e-06 1.00e-04
Smp_157390.1 Smp_172510.2 0.90 4.34e-06 1.00e-04
Smp_176430.2 Smp_157390.1 0.90 3.49e-06 1.00e-04
Smp_188900.1 Smp_157390.1 -0.90 4.62e-06 1.00e-04
Smp_157390.1 Smp_195070.1 -0.90 3.34e-06 1.00e-04