Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_157140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_157140.1 0 9.07 10.07 10.84 11.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157140.1 SmLINC00282-IBu -0.81 2.00e-04 2.40e-03
Smp_157140.1 SmLINC02255-IBu -0.91 2.29e-06 9.26e-05
Smp_157140.1 SmLINC02630-IBu -0.81 1.00e-04 2.30e-03
Smp_157140.1 SmLINC02657-IBu -0.96 1.42e-08 2.70e-06
Smp_157140.1 SmLINC03769-IBu -0.82 1.00e-04 1.90e-03
Smp_157140.1 SmLINC03930-IBu -0.81 2.00e-04 2.40e-03
Smp_157140.1 SmLINC04250-IBu 0.87 2.22e-05 4.00e-04
Smp_157140.1 SmLINC05284-IBu -0.81 1.00e-04 2.20e-03
Smp_157140.1 SmLINC06535-IBu -0.87 2.02e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00225-IBu 0 -1.26 -2.72 -4.38 -4.83
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06743-IBu 0 -1.22 -2.45 -5.05 -6.55
SmLINC06852-IBu 0 -0.66 -1.67 -3.89 -4.94
SmLINC07001-IBu 0 -1.21 -2.11 -6.65 -6.97
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_111340.1 0 -0.73 -0.50 -5.92 -6.46
Smp_130790.1 0 8.99 8.69 10.99 11.23
Smp_144920.1 0 0.61 2.49 4.01 4.87
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_167900.1 0 2.31 3.06 5.33 6.34
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_202690.1 0 2.99 3.08 5.69 6.36
Smp_204050.1 0 0.77 1.82 3.81 4.33
Smp_214020.1 0 1.35 2.40 4.26 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157140.1 SmLINC00225-IBu -0.94 1.43e-07 1.38e-05
Smp_157140.1 SmLINC00998-IBu -0.93 3.63e-07 2.63e-05
Smp_157140.1 SmLINC02255-IBu -0.91 2.29e-06 9.58e-05
Smp_157140.1 SmLINC02657-IBu -0.96 1.42e-08 2.88e-06
Smp_157140.1 SmLINC06405-IBu -0.91 2.32e-06 9.68e-05
Smp_157140.1 SmLINC06441-IBu -0.91 2.47e-06 1.00e-04
Smp_157140.1 SmLINC06743-IBu -0.90 4.03e-06 1.00e-04
Smp_157140.1 SmLINC06852-IBu -0.90 3.45e-06 1.00e-04
Smp_157140.1 SmLINC07001-IBu -0.90 4.00e-06 1.00e-04
Smp_157140.1 Smp_021060.1 -0.91 1.83e-06 8.18e-05
Smp_111340.1 Smp_157140.1 -0.91 1.82e-06 8.15e-05
Smp_130790.1 Smp_157140.1 0.90 4.81e-06 1.00e-04
Smp_144920.1 Smp_157140.1 0.90 4.34e-06 1.00e-04
Smp_157390.1 Smp_157140.1 0.92 8.44e-07 4.73e-05
Smp_157450.1 Smp_157140.1 -0.92 8.40e-07 4.72e-05
Smp_157140.1 Smp_159900.1 -0.91 2.45e-06 1.00e-04
Smp_167900.1 Smp_157140.1 0.93 2.68e-07 2.13e-05
Smp_185080.1 Smp_157140.1 -0.91 1.40e-06 6.79e-05
Smp_157140.1 Smp_202690.1 0.92 6.53e-07 3.96e-05
Smp_204050.1 Smp_157140.1 0.91 1.68e-06 7.71e-05
Smp_157140.1 Smp_214020.1 0.91 1.74e-06 7.88e-05