Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_156760.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_156760.1 0 -1.15 -4.99 -4.27 1.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_156760.1 SmLINC00007-IBu 0.83 1.00e-04 1.50e-03
Smp_156760.1 SmLINC01520-IBu 0.80 3.00e-04 3.20e-03
Smp_156760.1 SmLINC02577-IBu 0.81 2.00e-04 2.70e-03
Smp_156760.1 SmLINC02776-IBu 0.89 6.37e-06 1.00e-04
Smp_156760.1 SmLINC02783-IBu 0.86 3.17e-05 6.00e-04
Smp_156760.1 SmLINC02786-IBu 0.87 2.20e-05 4.00e-04
Smp_156760.1 SmLINC04237-IBu 0.89 5.69e-06 1.00e-04
Smp_156760.1 SmLINC04627-IBu 0.87 2.32e-05 4.00e-04
Smp_156760.1 SmLINC05684-IBu 0.85 5.19e-05 8.00e-04