Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_156320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_156320.1 0 -0.66 -1.38 2.94 4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_156320.1 SmLINC00001-IBu 0.98 4.47e-11 6.39e-08
Smp_156320.1 SmLINC00004-IBu 0.97 4.20e-10 2.69e-07
Smp_156320.1 SmLINC00007-IBu 0.85 3.98e-05 7.00e-04
Smp_156320.1 SmLINC00266-IBu 0.84 8.11e-05 1.20e-03
Smp_156320.1 SmLINC00294-IBu -0.80 2.00e-04 2.80e-03
Smp_156320.1 SmLINC00369-IBu 0.84 6.62e-05 1.00e-03
Smp_156320.1 SmLINC00376-IBu 0.80 2.00e-04 2.80e-03
Smp_156320.1 SmLINC00525-IBu 0.88 1.49e-05 3.00e-04
Smp_156320.1 SmLINC01084-IBu 0.89 6.26e-06 1.00e-04
Smp_156320.1 SmLINC01431-IBu 0.89 6.78e-06 2.00e-04
Smp_156320.1 SmLINC01520-IBu 0.93 2.10e-07 1.72e-05
Smp_156320.1 SmLINC02029-IBu 0.87 1.78e-05 4.00e-04
Smp_156320.1 SmLINC02084-IBu 0.88 1.00e-05 2.00e-04
Smp_156320.1 SmLINC02255-IBu -0.80 2.00e-04 3.00e-03
Smp_156320.1 SmLINC02376-IBu 0.93 2.91e-07 2.15e-05
Smp_156320.1 SmLINC02394-IBu 0.93 3.15e-07 2.27e-05
Smp_156320.1 SmLINC02539-IBu 0.95 3.37e-08 4.88e-06
Smp_156320.1 SmLINC02540-IBu 0.93 3.25e-07 2.33e-05
Smp_156320.1 SmLINC02545-IBu 0.82 1.00e-04 2.00e-03
Smp_156320.1 SmLINC02546-IBu 0.84 8.84e-05 1.20e-03
Smp_156320.1 SmLINC02577-IBu 0.95 4.61e-08 6.03e-06
Smp_156320.1 SmLINC02630-IBu -0.80 3.00e-04 3.20e-03
Smp_156320.1 SmLINC02783-IBu 0.90 2.78e-06 1.00e-04
Smp_156320.1 SmLINC02786-IBu 0.80 3.00e-04 3.40e-03
Smp_156320.1 SmLINC03108-IBu 0.81 1.00e-04 2.20e-03
Smp_156320.1 SmLINC03326-IBu 0.95 2.39e-08 3.85e-06
Smp_156320.1 SmLINC03658-IBu 0.84 6.37e-05 1.00e-03
Smp_156320.1 SmLINC03849-IBu -0.82 1.00e-04 1.90e-03
Smp_156320.1 SmLINC03927-IBu 0.83 1.00e-04 1.50e-03
Smp_156320.1 SmLINC04235-IBu 0.92 5.62e-07 3.41e-05
Smp_156320.1 SmLINC04237-IBu 0.84 8.25e-05 1.20e-03
Smp_156320.1 SmLINC04421-IBu 0.93 4.70e-07 3.01e-05
Smp_156320.1 SmLINC04423-IBu 0.87 1.96e-05 4.00e-04
Smp_156320.1 SmLINC04627-IBu 0.86 3.43e-05 6.00e-04
Smp_156320.1 SmLINC05274-IBu -0.81 2.00e-04 2.70e-03
Smp_156320.1 SmLINC05289-IBu 0.93 4.26e-07 2.81e-05
Smp_156320.1 SmLINC05404-IBu 0.87 1.80e-05 4.00e-04
Smp_156320.1 SmLINC05604-IBu 0.95 6.06e-08 7.28e-06
Smp_156320.1 SmLINC05684-IBu 0.90 2.85e-06 1.00e-04
Smp_156320.1 SmLINC06024-IBu 0.89 6.91e-06 2.00e-04
Smp_156320.1 SmLINC06145-IBu 0.81 2.00e-04 2.40e-03
Smp_156320.1 SmLINC06239-IBu 0.82 1.00e-04 1.70e-03
Smp_156320.1 SmLINC06490-IBu -0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156320.1 0 -0.66 -1.38 2.94 4.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_156320.1 Smp_007950.1 0.94 1.20e-07 1.22e-05
Smp_156320.1 Smp_016490.2 0.96 4.81e-09 1.41e-06
Smp_156320.1 Smp_024180.2 0.92 5.35e-07 3.44e-05
Smp_156320.1 Smp_028870.1 0.97 2.26e-09 8.62e-07
Smp_033260.1 Smp_156320.1 0.93 2.47e-07 2.02e-05
Smp_156320.1 Smp_037720.1 0.93 2.75e-07 2.17e-05
Smp_038870.2 Smp_156320.1 0.91 1.85e-06 8.24e-05
Smp_050350.3 Smp_156320.1 0.94 9.98e-08 1.08e-05
Smp_156320.1 Smp_052280.2 0.91 1.62e-06 7.51e-05
Smp_156320.1 Smp_056460.1 0.93 4.16e-07 2.89e-05
Smp_083430.1 Smp_156320.1 0.96 3.86e-09 1.22e-06
Smp_156320.1 Smp_085180.1 0.95 1.47e-08 2.96e-06
Smp_156320.1 Smp_095410.1 0.91 2.45e-06 1.00e-04
Smp_156320.1 Smp_102780.1 0.97 1.97e-09 7.89e-07
Smp_156320.1 Smp_123880.1 0.95 2.02e-08 3.65e-06
Smp_156320.1 Smp_130100.1 0.95 2.41e-08 4.12e-06
Smp_156320.1 Smp_131410.1 0.96 1.46e-08 2.94e-06
Smp_156320.1 Smp_131490.1 0.96 8.20e-09 2.00e-06
Smp_156320.1 Smp_137720.1 0.93 2.61e-07 2.09e-05
Smp_156320.1 Smp_137810.1 0.98 1.61e-10 1.58e-07
Smp_156320.1 Smp_139240.1 0.93 3.04e-07 2.32e-05
Smp_156320.1 Smp_140720.1 0.96 9.11e-09 2.14e-06
Smp_156320.1 Smp_155570.1 0.99 3.46e-13 3.43e-09
Smp_156320.1 Smp_156930.1 0.90 2.74e-06 1.00e-04
Smp_156320.1 Smp_159650.1 0.94 7.42e-08 8.83e-06
Smp_156320.1 Smp_162320.1 0.94 1.31e-07 1.30e-05
Smp_156320.1 Smp_163700.1 0.94 1.09e-07 1.15e-05
Smp_156320.1 Smp_164320.1 0.96 4.32e-09 1.31e-06
Smp_156320.1 Smp_181070.1 0.91 2.00e-06 8.70e-05
Smp_156320.1 Smp_187140.1 0.94 1.26e-07 1.26e-05
Smp_156320.1 Smp_192780.1 0.95 1.77e-08 3.34e-06
Smp_156320.1 Smp_194380.1 0.94 1.44e-07 1.39e-05
Smp_156320.1 Smp_194910.1 0.93 4.84e-07 3.21e-05
Smp_156320.1 Smp_196830.1 0.95 2.91e-08 4.68e-06
Smp_156320.1 Smp_202610.1 0.98 7.67e-12 2.33e-08
Smp_156320.1 Smp_203030.1 0.97 1.76e-09 7.33e-07
Smp_156320.1 Smp_205580.1 0.93 2.77e-07 2.18e-05