Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_156090.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_156090.1 0 1.38 3.36 5.03 5.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_156090.1 SmLINC00282-IBu -0.80 2.00e-04 2.90e-03
Smp_156090.1 SmLINC00554-IBu -0.84 7.13e-05 1.10e-03
Smp_156090.1 SmLINC00556-IBu -0.82 1.00e-04 2.10e-03
Smp_156090.1 SmLINC01733-IBu 0.80 2.00e-04 3.00e-03
Smp_156090.1 SmLINC01746-IBu 0.81 2.00e-04 2.70e-03
Smp_156090.1 SmLINC02255-IBu -0.85 5.97e-05 9.00e-04
Smp_156090.1 SmLINC02630-IBu -0.83 9.83e-05 1.30e-03
Smp_156090.1 SmLINC02657-IBu -0.84 7.73e-05 1.10e-03
Smp_156090.1 SmLINC03693-IBu 0.82 1.00e-04 1.90e-03
Smp_156090.1 SmLINC04432-IBu 0.83 9.87e-05 1.40e-03
Smp_156090.1 SmLINC04475-IBu 0.86 3.57e-05 6.00e-04
Smp_156090.1 SmLINC05284-IBu -0.82 1.00e-04 1.90e-03
Smp_156090.1 SmLINC05632-IBu 0.87 1.91e-05 4.00e-04
Smp_156090.1 SmLINC05870-IBu 0.89 5.83e-06 1.00e-04
Smp_156090.1 SmLINC06128-IBu -0.84 6.34e-05 1.00e-03
Smp_156090.1 SmLINC06221-IBu 0.85 4.39e-05 7.00e-04
Smp_156090.1 SmLINC06449-IBu 0.80 2.00e-04 2.80e-03
Smp_156090.1 SmLINC06535-IBu -0.84 6.73e-05 1.00e-03
Smp_156090.1 SmLINC06543-IBu 0.81 2.00e-04 2.30e-03
Smp_156090.1 SmLINC06903-IBu -0.81 2.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_156090.1 0 1.38 3.36 5.03 5.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055340.2 Smp_156090.1 0.92 6.94e-07 4.13e-05