Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_155210.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_155210.1 0 0.30 2.34 4.66 4.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_155210.1 SmLINC00266-IBu 0.80 2.00e-04 3.00e-03
Smp_155210.1 SmLINC00282-IBu -0.83 8.98e-05 1.30e-03
Smp_155210.1 SmLINC00369-IBu 0.83 1.00e-04 1.40e-03
Smp_155210.1 SmLINC00477-IBu 0.80 3.00e-04 3.20e-03
Smp_155210.1 SmLINC00548-IBu 0.84 6.68e-05 1.00e-03
Smp_155210.1 SmLINC00633-IBu 0.81 1.00e-04 2.10e-03
Smp_155210.1 SmLINC01066-IBu 0.81 1.00e-04 2.20e-03
Smp_155210.1 SmLINC01122-IBu 0.81 1.00e-04 2.20e-03
Smp_155210.1 SmLINC01431-IBu 0.84 7.95e-05 1.10e-03
Smp_155210.1 SmLINC01435-IBu 0.84 8.01e-05 1.20e-03
Smp_155210.1 SmLINC01538-IBu 0.83 1.00e-04 1.40e-03
Smp_155210.1 SmLINC01569-IBu 0.82 1.00e-04 1.70e-03
Smp_155210.1 SmLINC01637-IBu -0.80 2.00e-04 3.10e-03
Smp_155210.1 SmLINC01733-IBu 0.83 1.00e-04 1.40e-03
Smp_155210.1 SmLINC01746-IBu 0.85 4.95e-05 8.00e-04
Smp_155210.1 SmLINC02084-IBu 0.84 6.24e-05 1.00e-03
Smp_155210.1 SmLINC02255-IBu -0.90 4.68e-06 1.00e-04
Smp_155210.1 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_155210.1 SmLINC02630-IBu -0.84 8.77e-05 1.20e-03
Smp_155210.1 SmLINC02657-IBu -0.91 1.42e-06 6.60e-05
Smp_155210.1 SmLINC03309-IBu 0.85 5.36e-05 8.00e-04
Smp_155210.1 SmLINC03693-IBu 0.86 2.69e-05 5.00e-04
Smp_155210.1 SmLINC03927-IBu 0.82 1.00e-04 2.00e-03
Smp_155210.1 SmLINC04432-IBu 0.86 3.43e-05 6.00e-04
Smp_155210.1 SmLINC04475-IBu 0.90 3.52e-06 1.00e-04
Smp_155210.1 SmLINC04521-IBu 0.80 3.00e-04 3.30e-03
Smp_155210.1 SmLINC04684-IBu 0.83 1.00e-04 1.40e-03
Smp_155210.1 SmLINC05147-IBu 0.83 1.00e-04 1.60e-03
Smp_155210.1 SmLINC05258-IBu 0.83 1.00e-04 1.50e-03
Smp_155210.1 SmLINC05284-IBu -0.84 6.79e-05 1.00e-03
Smp_155210.1 SmLINC05632-IBu 0.84 6.18e-05 9.00e-04
Smp_155210.1 SmLINC05870-IBu 0.80 2.00e-04 2.90e-03
Smp_155210.1 SmLINC05990-IBu 0.80 2.00e-04 3.10e-03
Smp_155210.1 SmLINC06010-IBu 0.82 1.00e-04 2.00e-03
Smp_155210.1 SmLINC06128-IBu -0.81 2.00e-04 2.60e-03
Smp_155210.1 SmLINC06221-IBu 0.88 8.91e-06 2.00e-04
Smp_155210.1 SmLINC06418-IBu 0.81 2.00e-04 2.70e-03
Smp_155210.1 SmLINC06444-IBu 0.82 1.00e-04 1.80e-03
Smp_155210.1 SmLINC06449-IBu 0.84 6.23e-05 1.00e-03
Smp_155210.1 SmLINC06535-IBu -0.88 9.69e-06 2.00e-04
Smp_155210.1 SmLINC06543-IBu 0.86 2.81e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_155210.1 0 0.30 2.34 4.66 4.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_155210.1 Smp_051210.3 0.92 9.50e-07 5.14e-05
Smp_055340.2 Smp_155210.1 0.94 6.13e-08 7.75e-06
Smp_155210.1 Smp_145400.1 0.90 3.77e-06 1.00e-04