Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_154990.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
Smp_154990.1 0 1.77 2.06 5.38 4.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154990.1 SmLINC01431-IBu 0.78 5.00e-04 4.20e-03
Smp_154990.1 SmLINC02026-IBu -0.51 4.89e-02 1.10e-01
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_154990.1 0 1.77 2.06 5.38 4.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154990.1 SmLINC00171-IBu 0.95 3.25e-08 4.75e-06
Smp_154990.1 SmLINC00369-IBu 0.82 1.00e-04 1.90e-03
Smp_154990.1 SmLINC00477-IBu 0.95 4.67e-08 6.08e-06
Smp_154990.1 SmLINC00484-IBu 0.87 2.16e-05 4.00e-04
Smp_154990.1 SmLINC00548-IBu 0.83 9.85e-05 1.30e-03
Smp_154990.1 SmLINC00633-IBu 0.85 5.42e-05 9.00e-04
Smp_154990.1 SmLINC01066-IBu 0.96 1.01e-08 2.15e-06
Smp_154990.1 SmLINC01139-IBu 0.86 3.31e-05 6.00e-04
Smp_154990.1 SmLINC01433-IBu 0.98 1.10e-11 2.64e-08
Smp_154990.1 SmLINC01435-IBu 0.88 1.27e-05 3.00e-04
Smp_154990.1 SmLINC01538-IBu 0.84 6.61e-05 1.00e-03
Smp_154990.1 SmLINC01746-IBu 0.86 2.99e-05 5.00e-04
Smp_154990.1 SmLINC01822-IBu 0.98 1.17e-10 1.17e-07
Smp_154990.1 SmLINC02084-IBu 0.82 1.00e-04 1.80e-03
Smp_154990.1 SmLINC02581-IBu 0.82 1.00e-04 1.80e-03
Smp_154990.1 SmLINC03108-IBu 0.88 9.82e-06 2.00e-04
Smp_154990.1 SmLINC03309-IBu 0.88 1.08e-05 2.00e-04
Smp_154990.1 SmLINC03542-IBu 0.93 3.19e-07 2.29e-05
Smp_154990.1 SmLINC03693-IBu 0.94 1.31e-07 1.24e-05
Smp_154990.1 SmLINC04054-IBu 0.89 5.31e-06 1.00e-04
Smp_154990.1 SmLINC04345-IBu 0.82 1.00e-04 1.70e-03
Smp_154990.1 SmLINC04475-IBu 0.83 1.00e-04 1.40e-03
Smp_154990.1 SmLINC04521-IBu 0.80 2.00e-04 2.80e-03
Smp_154990.1 SmLINC04663-IBu 0.87 2.37e-05 4.00e-04
Smp_154990.1 SmLINC04684-IBu 0.87 1.63e-05 3.00e-04
Smp_154990.1 SmLINC04747-IBu 0.82 1.00e-04 1.90e-03
Smp_154990.1 SmLINC04759-IBu 0.84 8.34e-05 1.20e-03
Smp_154990.1 SmLINC04769-IBu 0.90 2.94e-06 1.00e-04
Smp_154990.1 SmLINC05009-IBu 0.93 3.50e-07 2.45e-05
Smp_154990.1 SmLINC05147-IBu 0.90 2.61e-06 1.00e-04
Smp_154990.1 SmLINC05171-IBu 0.94 1.29e-07 1.22e-05
Smp_154990.1 SmLINC05258-IBu 0.92 1.18e-06 5.80e-05
Smp_154990.1 SmLINC06007-IBu 0.96 1.08e-08 2.25e-06
Smp_154990.1 SmLINC06221-IBu 0.94 6.41e-08 7.56e-06
Smp_154990.1 SmLINC06418-IBu 0.89 6.12e-06 1.00e-04
Smp_154990.1 SmLINC06449-IBu 0.84 6.15e-05 9.00e-04
Smp_154990.1 SmLINC06536-IBu 0.94 9.49e-08 9.90e-06
Smp_154990.1 SmLINC06538-IBu 0.96 1.36e-08 2.63e-06
Smp_154990.1 SmLINC06543-IBu 0.93 2.89e-07 2.14e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_154990.1 0 1.77 2.06 5.38 4.49
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154990.1 Smp_045200.1 0.92 6.95e-07 4.13e-05
Smp_058660.1 Smp_154990.1 0.92 1.17e-06 5.98e-05
Smp_154990.1 Smp_082580.1 0.92 7.09e-07 4.19e-05
Smp_154990.1 Smp_084270.1 0.93 2.01e-07 1.74e-05
Smp_154990.1 Smp_105730.1 0.91 1.59e-06 7.41e-05
Smp_118560.1 Smp_154990.1 0.92 6.46e-07 3.92e-05
Smp_154990.1 Smp_123200.1 0.97 2.83e-10 2.27e-07
Smp_154990.1 Smp_125210.1 0.92 6.29e-07 3.86e-05
Smp_154990.1 Smp_128510.1 0.91 2.03e-06 8.81e-05
Smp_154990.1 Smp_134960.1 0.94 7.27e-08 8.71e-06
Smp_137320.1 Smp_154990.1 0.95 3.18e-08 4.97e-06
Smp_154990.1 Smp_141680.1 0.92 7.37e-07 4.30e-05
Smp_163940.1 Smp_154990.1 0.95 3.39e-08 5.19e-06
Smp_154990.1 Smp_170280.1 0.93 4.28e-07 2.95e-05
Smp_154990.1 Smp_175020.1 0.93 4.10e-07 2.86e-05
Smp_154990.1 Smp_194960.1 0.93 4.89e-07 3.23e-05
Smp_154990.1 Smp_194970.1 0.93 3.00e-07 2.31e-05
Smp_194980.1 Smp_154990.1 0.93 3.68e-07 2.65e-05
Smp_154990.1 Smp_200750.1 0.95 3.05e-08 4.84e-06