Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_154800.1 Data

Correlation between Smp_154800.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_154800.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_154800.1 0 -0.16 0.66 6.37 -0.02

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154800.1 SmLINC00171-IBu 0.88 1.37e-05 3.00e-04
Smp_154800.1 SmLINC00477-IBu 0.91 1.49e-06 6.82e-05
Smp_154800.1 SmLINC00484-IBu 0.83 9.71e-05 1.30e-03
Smp_154800.1 SmLINC00548-IBu 0.82 1.00e-04 1.70e-03
Smp_154800.1 SmLINC00769-IBu 0.91 1.62e-06 7.23e-05
Smp_154800.1 SmLINC01066-IBu 0.92 9.31e-07 4.88e-05
Smp_154800.1 SmLINC01139-IBu 0.88 1.37e-05 3.00e-04
Smp_154800.1 SmLINC01231-IBu 0.88 1.15e-05 2.00e-04
Smp_154800.1 SmLINC01433-IBu 0.88 9.91e-06 2.00e-04
Smp_154800.1 SmLINC01538-IBu 0.83 1.00e-04 1.50e-03
Smp_154800.1 SmLINC01746-IBu 0.85 5.10e-05 8.00e-04
Smp_154800.1 SmLINC01822-IBu 0.92 5.60e-07 3.41e-05
Smp_154800.1 SmLINC02581-IBu 0.85 5.37e-05 8.00e-04
Smp_154800.1 SmLINC03309-IBu 0.87 2.32e-05 4.00e-04
Smp_154800.1 SmLINC03542-IBu 0.85 4.01e-05 7.00e-04
Smp_154800.1 SmLINC03693-IBu 0.85 5.47e-05 9.00e-04
Smp_154800.1 SmLINC04054-IBu 0.95 2.70e-08 4.19e-06
Smp_154800.1 SmLINC04345-IBu 0.89 5.85e-06 1.00e-04
Smp_154800.1 SmLINC04432-IBu 0.83 1.00e-04 1.50e-03
Smp_154800.1 SmLINC04475-IBu 0.88 9.72e-06 2.00e-04
Smp_154800.1 SmLINC04637-IBu 0.84 6.91e-05 1.00e-03
Smp_154800.1 SmLINC04663-IBu 0.89 8.43e-06 2.00e-04
Smp_154800.1 SmLINC04684-IBu 0.83 1.00e-04 1.40e-03
Smp_154800.1 SmLINC04747-IBu 0.93 2.15e-07 1.74e-05
Smp_154800.1 SmLINC04769-IBu 0.92 5.29e-07 3.27e-05
Smp_154800.1 SmLINC04953-IBu 0.84 7.37e-05 1.10e-03
Smp_154800.1 SmLINC05009-IBu 0.96 1.11e-08 2.29e-06
Smp_154800.1 SmLINC05171-IBu 0.96 3.50e-09 1.06e-06
Smp_154800.1 SmLINC05258-IBu 0.85 4.79e-05 8.00e-04
Smp_154800.1 SmLINC06007-IBu 0.94 7.08e-08 8.09e-06
Smp_154800.1 SmLINC06010-IBu 0.86 3.00e-05 5.00e-04
Smp_154800.1 SmLINC06221-IBu 0.87 2.05e-05 4.00e-04
Smp_154800.1 SmLINC06418-IBu 0.87 1.82e-05 4.00e-04
Smp_154800.1 SmLINC06444-IBu 0.84 8.75e-05 1.20e-03
Smp_154800.1 SmLINC06449-IBu 0.85 4.67e-05 8.00e-04
Smp_154800.1 SmLINC06536-IBu 0.94 1.61e-07 1.43e-05
Smp_154800.1 SmLINC06538-IBu 0.86 3.89e-05 7.00e-04
Smp_154800.1 SmLINC06543-IBu 0.84 8.14e-05 1.20e-03

Correlation between Smp_154800.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_154800.1 0 -0.16 0.66 6.37 -0.02
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 Smp_154800.1 0.96 4.14e-09 1.27e-06
Smp_068270.1 Smp_154800.1 0.90 3.43e-06 1.00e-04
Smp_084270.1 Smp_154800.1 0.95 4.10e-08 5.90e-06
Smp_105730.1 Smp_154800.1 0.91 1.81e-06 8.11e-05
Smp_125210.1 Smp_154800.1 0.93 3.84e-07 2.73e-05
Smp_128510.1 Smp_154800.1 0.97 3.37e-10 2.54e-07
Smp_134960.1 Smp_154800.1 0.92 5.60e-07 3.55e-05
Smp_160360.1 Smp_154800.1 0.93 2.08e-07 1.78e-05
Smp_163940.1 Smp_154800.1 0.91 1.42e-06 6.84e-05
Smp_164550.1 Smp_154800.1 0.90 2.60e-06 1.00e-04
Smp_170280.1 Smp_154800.1 0.90 3.82e-06 1.00e-04
Smp_154800.1 Smp_175020.1 0.95 4.04e-08 5.85e-06
Smp_154800.1 Smp_194970.1 0.90 3.80e-06 1.00e-04
Smp_194980.1 Smp_154800.1 0.90 3.83e-06 1.00e-04
Smp_197400.1 Smp_154800.1 0.92 1.10e-06 5.73e-05
Smp_200750.1 Smp_154800.1 0.95 4.89e-08 6.65e-06