Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_154390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_154390.1 0 1.91 0.76 3.80 7.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154390.1 SmLINC00001-IBu 0.83 1.00e-04 1.50e-03
Smp_154390.1 SmLINC00004-IBu 0.82 1.00e-04 1.70e-03
Smp_154390.1 SmLINC01520-IBu 0.90 4.34e-06 1.00e-04
Smp_154390.1 SmLINC02029-IBu 0.93 3.01e-07 2.21e-05
Smp_154390.1 SmLINC02376-IBu 0.87 1.54e-05 3.00e-04
Smp_154390.1 SmLINC02539-IBu 0.85 4.33e-05 7.00e-04
Smp_154390.1 SmLINC02577-IBu 0.88 1.04e-05 2.00e-04
Smp_154390.1 SmLINC02783-IBu 0.90 4.30e-06 1.00e-04
Smp_154390.1 SmLINC02786-IBu 0.94 1.71e-07 1.49e-05
Smp_154390.1 SmLINC03658-IBu 0.93 2.54e-07 1.96e-05
Smp_154390.1 SmLINC04235-IBu 0.95 2.59e-08 4.07e-06
Smp_154390.1 SmLINC04237-IBu 0.84 7.31e-05 1.10e-03
Smp_154390.1 SmLINC04627-IBu 0.89 7.09e-06 2.00e-04
Smp_154390.1 SmLINC04896-IBu 0.92 1.14e-06 5.65e-05
Smp_154390.1 SmLINC05404-IBu 0.94 8.33e-08 9.05e-06
Smp_154390.1 SmLINC05604-IBu 0.85 5.61e-05 9.00e-04
Smp_154390.1 SmLINC05684-IBu 0.94 1.85e-07 1.57e-05
Smp_154390.1 SmLINC06239-IBu 0.96 9.67e-09 2.08e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_154390.1 0.91 1.92e-06 8.46e-05
Smp_004420.3 Smp_154390.1 0.92 9.37e-07 5.09e-05
Smp_016490.2 Smp_154390.1 0.91 1.50e-06 7.11e-05
Smp_037720.1 Smp_154390.1 0.90 3.95e-06 1.00e-04
Smp_041540.1 Smp_154390.1 0.96 3.06e-09 1.04e-06
Smp_154390.1 Smp_070540.1 0.93 2.30e-07 1.91e-05
Smp_089270.1 Smp_154390.1 0.92 9.02e-07 4.96e-05
Smp_102780.1 Smp_154390.1 0.90 4.50e-06 1.00e-04
Smp_105450.1 Smp_154390.1 0.94 1.34e-07 1.32e-05
Smp_154390.1 Smp_105450.2 0.96 9.35e-09 2.18e-06
Smp_126340.1 Smp_154390.1 0.92 8.81e-07 4.88e-05
Smp_154390.1 Smp_130100.1 0.94 1.60e-07 1.49e-05
Smp_130970.1 Smp_154390.1 0.95 4.51e-08 6.30e-06
Smp_136730.1 Smp_154390.1 0.92 5.32e-07 3.43e-05
Smp_137460.1 Smp_154390.1 0.99 1.02e-12 6.69e-09
Smp_137700.1 Smp_154390.1 0.94 1.54e-07 1.45e-05
Smp_138360.1 Smp_154390.1 0.97 1.88e-09 7.66e-07
Smp_139160.1 Smp_154390.1 0.94 1.06e-07 1.12e-05
Smp_139240.1 Smp_154390.1 0.90 3.47e-06 1.00e-04
Smp_140720.1 Smp_154390.1 0.90 3.09e-06 1.00e-04
Smp_152150.1 Smp_154390.1 0.99 1.25e-12 7.60e-09
Smp_159650.1 Smp_154390.1 0.90 3.42e-06 1.00e-04
Smp_162320.1 Smp_154390.1 0.92 1.19e-06 6.03e-05
Smp_164400.1 Smp_154390.1 0.99 1.56e-12 8.73e-09
Smp_167830.1 Smp_154390.1 0.91 1.51e-06 7.16e-05
Smp_170840.1 Smp_154390.1 0.94 1.67e-07 1.54e-05
Smp_181070.1 Smp_154390.1 0.96 1.40e-08 2.86e-06
Smp_187140.1 Smp_154390.1 0.91 2.16e-06 9.19e-05
Smp_154390.1 Smp_194910.1 0.93 3.62e-07 2.62e-05
Smp_203030.1 Smp_154390.1 0.92 8.92e-07 4.92e-05
Smp_205580.1 Smp_154390.1 0.90 3.72e-06 1.00e-04