Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_154300.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154300.1 SmLINC02039-IBu 0.92 8.32e-07 4.50e-05
Smp_154300.1 SmLINC02678-IBu 0.85 4.81e-05 8.00e-04
Smp_154300.1 SmLINC06128-IBu 0.80 2.00e-04 2.90e-03
Smp_154300.1 SmLINC06892-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154300.1 Smp_009650.2 0.92 1.03e-06 5.46e-05
Smp_154300.1 Smp_018880.1 0.92 5.60e-07 3.55e-05
Smp_035270.1 Smp_154300.1 0.90 2.82e-06 1.00e-04
Smp_154300.1 Smp_071380.2 0.92 1.16e-06 5.92e-05
Smp_102670.1 Smp_154300.1 0.91 1.60e-06 7.45e-05
Smp_106390.1 Smp_154300.1 0.93 5.02e-07 3.29e-05
Smp_154300.1 Smp_133770.1 0.95 4.82e-08 6.59e-06
Smp_150690.2 Smp_154300.1 0.90 3.10e-06 1.00e-04
Smp_154300.1 Smp_153240.1 0.96 6.87e-09 1.78e-06
Smp_154300.1 Smp_178240.1 0.96 3.48e-09 1.14e-06
Smp_154300.1 Smp_185360.1 0.92 7.33e-07 4.29e-05