Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_154010.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154010.1 SmLINC00004-IBu -0.81 2.00e-04 2.60e-03
Smp_154010.1 SmLINC00369-IBu -0.81 1.00e-04 2.20e-03
Smp_154010.1 SmLINC00525-IBu -0.80 3.00e-04 3.30e-03
Smp_154010.1 SmLINC00633-IBu -0.80 3.00e-04 3.30e-03
Smp_154010.1 SmLINC01084-IBu -0.81 2.00e-04 2.50e-03
Smp_154010.1 SmLINC01431-IBu -0.84 7.59e-05 1.10e-03
Smp_154010.1 SmLINC02084-IBu -0.81 2.00e-04 2.40e-03
Smp_154010.1 SmLINC02678-IBu 0.84 7.12e-05 1.10e-03
Smp_154010.1 SmLINC04421-IBu -0.83 1.00e-04 1.40e-03
Smp_154010.1 SmLINC05604-IBu -0.80 3.00e-04 3.20e-03
Smp_154010.1 SmLINC06145-IBu -0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02120-IBu 0 2.99 -7.55 4.81 5.21
SmLINC03224-IBu 0 9.29 0.00 10.55 11.51
Smp_006320.1 0 -1.11 -1.68 -4.98 -4.63
Smp_053940.1 0 -1.21 -1.57 -5.40 -5.18
Smp_135180.1 0 -2.02 -1.68 -4.72 -7.04
Smp_136220.1 0 -0.62 0.48 -7.42 -7.96
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55
Smp_185890.1 0 -1.37 -1.67 -7.65 -9.83
Smp_186170.1 0 -1.79 -1.59 -7.16 -8.78
Smp_194130.1 0 1.83 -1.01 3.48 3.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_154010.1 SmLINC02120-IBu -0.90 2.77e-06 1.00e-04
Smp_154010.1 SmLINC03224-IBu -0.91 1.30e-06 6.43e-05
Smp_006320.1 Smp_154010.1 0.90 4.32e-06 1.00e-04
Smp_053940.1 Smp_154010.1 0.91 1.97e-06 8.60e-05
Smp_135180.1 Smp_154010.1 0.92 1.01e-06 5.39e-05
Smp_136220.1 Smp_154010.1 0.90 4.10e-06 1.00e-04
Smp_182880.1 Smp_154010.1 0.90 3.69e-06 1.00e-04
Smp_185890.1 Smp_154010.1 0.93 4.44e-07 3.02e-05
Smp_186170.1 Smp_154010.1 0.93 2.59e-07 2.08e-05
Smp_194130.1 Smp_154010.1 -0.90 4.72e-06 1.00e-04