Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_153650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_153650.1 SmLINC00372-IBu 0.97 3.15e-10 2.24e-07
Smp_153650.1 SmLINC01316-IBu 0.88 1.27e-05 3.00e-04
Smp_153650.1 SmLINC02646-IBu 0.80 3.00e-04 3.20e-03
Smp_153650.1 SmLINC04430-IBu 0.95 1.67e-08 3.02e-06
Smp_153650.1 SmLINC04947-IBu 0.84 7.49e-05 1.10e-03
Smp_153650.1 SmLINC05559-IBu 0.96 9.97e-09 2.13e-06
Smp_153650.1 SmLINC06700-IBu 0.95 6.06e-08 7.27e-06
Smp_153650.1 SmLINC06836-IBu 0.97 7.06e-10 3.77e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_153650.1 0.95 2.82e-08 4.59e-06
Smp_153650.1 Smp_032120.1 0.97 2.16e-09 8.38e-07
Smp_153650.1 Smp_034840.1 0.90 3.66e-06 1.00e-04
Smp_153650.1 Smp_036270.3 0.93 3.02e-07 2.32e-05
Smp_153650.1 Smp_062070.1 0.94 9.97e-08 1.07e-05
Smp_063650.3 Smp_153650.1 0.93 3.15e-07 2.38e-05
Smp_153650.1 Smp_084940.2 0.92 7.56e-07 4.38e-05
Smp_153650.1 Smp_098370.1 0.93 3.89e-07 2.76e-05
Smp_098890.1 Smp_153650.1 0.90 3.00e-06 1.00e-04
Smp_103540.1 Smp_153650.1 0.92 5.20e-07 3.38e-05
Smp_138080.1 Smp_153650.1 0.93 2.53e-07 2.05e-05
Smp_153650.1 Smp_159070.3 0.96 3.23e-09 1.08e-06
Smp_153650.1 Smp_159150.1 0.92 7.32e-07 4.28e-05
Smp_200120.1 Smp_153650.1 0.94 1.31e-07 1.30e-05