Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_153630.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_153630.1 0 0.09 0.70 5.26 7.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_153630.1 SmLINC00001-IBu 0.95 1.73e-08 3.09e-06
Smp_153630.1 SmLINC00004-IBu 0.96 2.72e-09 9.03e-07
Smp_153630.1 SmLINC00525-IBu 0.85 5.23e-05 8.00e-04
Smp_153630.1 SmLINC01084-IBu 0.84 6.05e-05 9.00e-04
Smp_153630.1 SmLINC01431-IBu 0.82 1.00e-04 2.10e-03
Smp_153630.1 SmLINC01520-IBu 0.88 1.40e-05 3.00e-04
Smp_153630.1 SmLINC02029-IBu 0.90 2.75e-06 1.00e-04
Smp_153630.1 SmLINC02376-IBu 0.91 1.35e-06 6.37e-05
Smp_153630.1 SmLINC02394-IBu 0.87 1.94e-05 4.00e-04
Smp_153630.1 SmLINC02539-IBu 0.90 3.58e-06 1.00e-04
Smp_153630.1 SmLINC02540-IBu 0.82 1.00e-04 1.90e-03
Smp_153630.1 SmLINC02577-IBu 0.89 5.50e-06 1.00e-04
Smp_153630.1 SmLINC02783-IBu 0.87 2.28e-05 4.00e-04
Smp_153630.1 SmLINC02786-IBu 0.80 2.00e-04 2.90e-03
Smp_153630.1 SmLINC03326-IBu 0.88 1.26e-05 3.00e-04
Smp_153630.1 SmLINC03658-IBu 0.84 7.67e-05 1.10e-03
Smp_153630.1 SmLINC04235-IBu 0.97 3.73e-10 2.50e-07
Smp_153630.1 SmLINC04421-IBu 0.89 7.39e-06 2.00e-04
Smp_153630.1 SmLINC04423-IBu 0.93 4.04e-07 2.71e-05
Smp_153630.1 SmLINC04627-IBu 0.88 1.21e-05 3.00e-04
Smp_153630.1 SmLINC04896-IBu 0.81 2.00e-04 2.30e-03
Smp_153630.1 SmLINC05289-IBu 0.89 8.18e-06 2.00e-04
Smp_153630.1 SmLINC05404-IBu 0.88 1.07e-05 2.00e-04
Smp_153630.1 SmLINC05604-IBu 0.92 6.11e-07 3.62e-05
Smp_153630.1 SmLINC05684-IBu 0.90 4.48e-06 1.00e-04
Smp_153630.1 SmLINC06024-IBu 0.89 5.09e-06 1.00e-04
Smp_153630.1 SmLINC06239-IBu 0.94 1.21e-07 1.17e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_153630.1 0 0.09 0.70 5.26 7.09
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_153630.1 Smp_004420.3 0.90 4.12e-06 1.00e-04
Smp_153630.1 Smp_004780.3 0.96 7.21e-09 1.83e-06
Smp_153630.1 Smp_016490.2 0.96 1.17e-08 2.54e-06
Smp_153630.1 Smp_024180.1 0.93 4.09e-07 2.86e-05
Smp_153630.1 Smp_024180.2 0.93 3.25e-07 2.43e-05
Smp_153630.1 Smp_028870.1 0.95 1.70e-08 3.26e-06
Smp_033260.1 Smp_153630.1 0.90 2.77e-06 1.00e-04
Smp_050350.3 Smp_153630.1 0.93 1.96e-07 1.72e-05
Smp_153630.1 Smp_052280.2 0.90 4.73e-06 1.00e-04
Smp_153630.1 Smp_085180.1 0.93 3.31e-07 2.46e-05
Smp_153630.1 Smp_086450.3 0.93 2.33e-07 1.93e-05
Smp_153630.1 Smp_094050.1 0.92 7.34e-07 4.29e-05
Smp_153630.1 Smp_102780.1 0.95 3.43e-08 5.23e-06
Smp_153630.1 Smp_123880.1 0.90 3.44e-06 1.00e-04
Smp_153630.1 Smp_130100.1 0.96 6.64e-09 1.74e-06
Smp_153630.1 Smp_131410.1 0.91 2.25e-06 9.47e-05
Smp_153630.1 Smp_131490.1 0.94 6.44e-08 8.02e-06
Smp_153630.1 Smp_137720.1 0.91 1.39e-06 6.73e-05
Smp_153630.1 Smp_137810.1 0.91 1.22e-06 6.16e-05
Smp_153630.1 Smp_139160.1 0.90 4.47e-06 1.00e-04
Smp_153630.1 Smp_139240.1 0.90 4.75e-06 1.00e-04
Smp_153630.1 Smp_140720.1 0.95 3.15e-08 4.94e-06
Smp_153630.1 Smp_155570.1 0.94 1.07e-07 1.14e-05
Smp_153630.1 Smp_159650.1 0.97 1.50e-09 6.62e-07
Smp_153630.1 Smp_162320.1 0.93 3.55e-07 2.59e-05
Smp_153630.1 Smp_164320.1 0.92 6.14e-07 3.79e-05
Smp_153630.1 Smp_181070.1 0.92 6.44e-07 3.92e-05
Smp_153630.1 Smp_187140.1 0.91 1.77e-06 8.01e-05
Smp_153630.1 Smp_192780.1 0.91 1.26e-06 6.29e-05
Smp_153630.1 Smp_194910.1 0.92 1.10e-06 5.70e-05
Smp_153630.1 Smp_201910.1 0.91 1.56e-06 7.31e-05
Smp_153630.1 Smp_202610.1 0.94 7.59e-08 8.97e-06
Smp_153630.1 Smp_203030.1 0.97 1.47e-09 6.53e-07
Smp_153630.1 Smp_205580.1 0.91 1.88e-06 8.34e-05